Empidonax traillii (willow flycatcher): 114071978
Help
Entry
114071978 CDS
T05887
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
etl04131
]
114071978 (VPS13A)
Membrane trafficking [BR:
etl04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
114071978 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
RRM_fung
Motif
Other DBs
NCBI-GeneID:
114071978
NCBI-ProteinID:
XP_027765687
LinkDB
All DBs
Position
Unknown
AA seq
3204 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALNNLEIKENALSQLDVPFKVKVG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQFLEARQRELQRIEE
AKQKVADQDKVKEEKQDTFVEKLVTQVIKNLQLKISSIHIRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGFDESLVNLKQGVA
SHSVIPEGYDFVFRPISARAKLLMNPRSDVDFSSPKMDLDVNLQDITVELNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKTWWQYVIYGILEVNVQPKLQMWSWEHIRHHRK
QVKSYKEMYKTKITSKKPDEDILKLLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWSWSGEKKDEKKQEIKGSSLEELMTQEEKAKLYAAIGYSETAVDP
FLPKSYEAMKFSVKLLSMSISIRENRQTPELVEFALTGLSTVFTQRPGAQAIRFETKITS
LEVTGTAQDKCTPCLLSSRTAYSDESTSLLSIMFETNPLDEKADQRLRIESQPLEIVYDA
MTVNNLVDFFRPPKDVRLEQLTSATLMKLEEFREKTSTGLMYIIETQKVLDLKINLMASY
IIVPQRGFYDNTSNLLLLDLGSVKMTSKNRSDLSELKVGQSSIEDIMSRAYDSFDIQLSS
IHLLYSKHDENWQEARKLKNSSQCILQPLDVNMEFSRAMVVTDARMPKFKLSGQMPLLSI
QVSDQKLTSILELIDSIPKPKSVPTTNSSPKPAEPGISPVLSAPHLSQGMLPVLDLHSFP
ESESEEEFYDALSSPMEEVTFFEGPSGSLKQAASSTRQKRLRKQESLKNMTEFQLRFEVA
EVLIKLCRLTNNTEMPVLQLDILGLGTELKLRTFDMTANAFLCEVCLLCPEYMDDNDKPV
YIITTLDNVEEDLLTLEYIKTDINGPELKTTYQNVLQKIKVNFSSLDVHLHTEALLNAMN
YLNNLLPKQETKVTEVPGKIEEKKDVLKKLTSKKMKYEDVIDLNICADLSCLSIFIREKK
HRIAEIHIEGLDSQVIMKKTATEVTAKLKNIVILDSDETALYKKALYITEKEVFNFRMIS
YVNATDGVAYSNMDVVDNRIYLTVGCIQVLFVNKFVSSILAFINNFQAAKEALTEATVQA
AEKAATGVKERSSRLALDINIKAPLVIIPQSAMSENVLVADLGLITVKNQFFIAKTRVCY
NLPPVIDSITVKLSELKIYRSCYEQGSLQTEVQLLQPVNLEVAVERNLAAAWYNEVPDIE
ISGRLKPMNLILSQEDITTILRTLNENAGESSGASTSFPEPKESIRHCSEMHSTSQHSAG
VTVVTSAVVELHSPVQIKTTLKLDFKFDSLTLVLYSPNSKQVTTVDQRDDSLKLAEFKLV
LMSAALKMLSDGSMNASVKLTNCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDISYKQGR
DGTVLDVIVQEIYLCASMEFLLTVADIFLSANAESAAAQRNLKQSLPLKDQASVQPVSTT
EMNIVVKNPEIVFVADLTRSDAPALVATAQCEVFIKNSPERYNMTAAVKDIQMKACPFLP
EKRNGNITTVLQPCDFFFEMKQSGTNPQTADLMIKSLTLKVSPIIINTVITITSALSQTA
ETTEEEISQIPPDLWNKKDIKNLNMWFLEETNESEDKNPTTELVPTGESLKINIESVFLT
LEAGVGHRTVPMLLAKSSFVGEVKNWSTLINLRSRLELEVHYFNEMFGVWEPLLEPLEVE
KTDLFKPWILEIKMKKAKKVLLESDDEDEENYKVPEYKTVINVSSKDQLNITLSKCGLQM
LSNLGTAFAEAASQTSDIFKKDRAPFVIINSLGLPIMVLPSDAFSVLNVEFGAKIFHLND
GENLNMEFVRTKNESDQFTAMTTLSSKRFYIQICPRNHSTVEKIPLTKVGRCIYRVRHEE
SGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPLNVFEEGRCLGTALPGNEFNIPFSS
YRSILSLQPLANENEVDGEYHMCEGITFDDIIKNVDSLLQRKCQSVGSTNHSLIINIVPV
KDSLTSSLCAEDEWDFPYVVHLWPSVLLHNLLPYVITFSVEGNLNKYDTLQEGGSAQIHN
AVLDETKLDLQLLNYLDQNWKSEYHIKSDLPDISFTTFYCITELDKTELDIAVHVTYTTG
QMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQLRVTD
SELSDHFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRSKYTL
EVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPENDANKLLVRVENSDLPPKKINFD
QQENCLLLHLDNKLGGITVDVNLTEHSTVITFSDYHDGAAPFLLINHTNEEIIEYGQSSL
SELEDCLQPNKAVLYTWADPAGSRKLKWKCGNRTEEISPKEDKMEILRVDSRKAVYLMSF
YEGLQRIVLITEDENVFKLTYESVKAELAEQEIVLSLQDVGISLIDNYSKQEVSYIGITS
SDVVWETKPKKKSRWRPMSVKQIDKLEQEFKDYSELSPSENKIIELESNVSVCLTPNGMD
MKIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPP
KSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMGLRLDLGFLYALVALFTRTD
LSSEQELEQFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNK
EERKNELIPLQSLNLLLKSIGATLTDVQDIVFKLAFFELRYHFCTTQQLQSAVVRHYSKQ
AIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVG
GAVGGLAGAASRITGAVAKGVAAITMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGF
VSGITGIVTKPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSS
EDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFSKLRYIAHAMVNSTDLLMVT
KSGVLFVTKGTFGQLICEWQYTFDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIIN
FRSPEDAKWILSKLEEVRENQPKL
NT seq
9615 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggtcgtggacgtcctgaaccgtttcctcggcgactacgtggtg
aacctggacagctcccagctgaagctgggcatctggggaggagctgtagcactgaacaat
ctggaaataaaagaaaatgccttgagtcagctggatgtgccatttaaagttaaagtagga
catattggtcaacttaacctacagattccgtggcaaaacctatatactcaacctgttgaa
gcggttcttgatggagtttatttgcttattgtgcccacagccagtataaaatatgatgct
gaaaaagaagccaggcagttcttggaagcaagacaaagggaattacaaaggatagaggaa
gcaaagcagaaggtagctgaccaagataaagtaaaagaggagaaacaagatacttttgtg
gaaaaactagttactcaggtcatcaaaaatcttcagctgaaaatttccagcatccatatt
cgctatgaagatgatatcacaaatcggaataatcccttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aagttgttctacaagcttgtaagactggataacctttttgcttactggaatgtgaaatca
gagatgttttaccatggtggttttgatgaatcattggttaacttaaaacagggagttgcc
agccacagtgtgattccagaaggttatgattttgtattccgcccaatttcagctagagcc
aaacttcttatgaatcctcgatctgatgttgacttttcatcaccaaaaatggatttagat
gtaaacttacaggatataactgttgaactcaacaagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatatagaaagtacagacctgat
gttcccttgcacaacaacgccaagacatggtggcaatatgttatttatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtcatgggaacatattcgacaccacaggaag
caagtgaaaagctataaagagatgtataaaacaaagataacatcaaaaaaacctgatgaa
gatatcttaaaattgttggaggaatttgaaaaggccttggatatttttaacatcactcta
gcaaggcaacaagcagaagttgaggcaactaaggctggattaaaaatctacagaccagga
gtaaaacaagatgatgaaaactctggtggctggtttagttggatatggagctggtcaggt
gaaaaaaaggatgaaaaaaagcaagaaattaagggttcaagtcttgaagaattgatgaca
caggaagagaaggctaaactttacgcagcaattggatatagtgaaacagctgtggatcca
tttcttccaaaatcatatgaagccatgaagttctctgtgaagttactaagcatgtctata
tctataagagaaaacaggcaaactcctgagctggtagaatttgcattgactggcttgagt
acagtatttacccaacgaccaggtgcacaagcaataagatttgaaacaaaaattacctca
cttgaagttacaggcacggcccaagataagtgtactccctgtctcctatcttctcgaacg
gcctattcggatgagagtacctcacttttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggcttagaatagaatcacagcctctggaaatagtgtatgatgca
atgacagtaaataacttagtggatttcttcaggcctccaaaagatgtacgtttagagcaa
ctgacatcagcaactctgatgaaacttgaagagttccgtgaaaaaacatcaacaggtttg
atgtacattattgaaacccagaaagttcttgacctcaaaattaaccttatggcttcatac
atcattgttccacaaagaggattctatgataatacatcaaatttactacttctggatctt
ggtagtgttaagatgacaagcaaaaatcgttctgatttgtcagaactcaaagtaggacaa
agctctattgaagatataatgtcaagagcttatgacagttttgacatccagctcagcagt
atacacttactgtacagcaaacatgatgagaactggcaagaagctcggaagctaaaaaat
tcatctcaatgtatcttgcagcccttggatgtaaatatggaatttagcagggctatggtt
gttacagatgcaagaatgcccaagttcaaactctctggacagatgcctttactttctatt
caggtatcagatcagaagttgacaagtatcttggagctaattgatagtattcctaagcca
aaaagtgtgcctactaccaattcttctccaaaaccagctgagcctggaatatcccctgtg
ctttcagcaccacatttatcacaaggcatgcttcctgttctggatcttcactcatttcct
gagtcagaatcagaagaagaattttatgatgcactaagcagtcctatggaagaagtgaca
ttttttgaaggcccatctggttccctcaagcaagctgccagcagtacaaggcagaaaaga
ctacgtaaacaggaatctttgaaaaatatgacagaattccagctaaggtttgaagtcgct
gaggtcttaattaaattatgccgtcttaccaataatactgagatgcctgtgctgcaactt
gatattttgggcttaggcacagaacttaaattaagaacattcgacatgactgcaaatgct
ttcctttgtgaagtttgtctgctgtgcccagagtatatggatgataatgacaagccagtt
tacataattaccacattggataatgtagaagaggatcttctcactctagagtacataaag
actgatattaatggaccagaactcaaaactacctatcagaatgttctacagaaaataaag
gtgaacttttcatctttagatgttcatttgcatactgaagctctgctgaatgctatgaac
tatctgaataatcttctgcccaaacaagaaactaaagttacagaagtccctggaaaaata
gaggagaagaaggatgttcttaagaaattaacatcaaaaaaaatgaagtatgaagatgtt
attgacctcaatatctgtgcagatttatcatgcttgagtatctttattagagagaaaaaa
catagaatagctgaaatccacattgaaggtctggatagccaagtgatcatgaagaaaaca
gcaactgaagtgactgcaaaattgaagaacatcgttattttggattctgatgagacagca
ttgtataaaaaggctctttacatcacagaaaaagaagtcttcaacttcagaatgatatca
tatgtgaatgctacagatggagttgcatattcaaatatggatgttgttgacaatcgtatt
tacctaactgttgggtgtattcaagtactttttgtcaacaagtttgtttcatctattttg
gcatttataaataactttcaagctgccaaggaagctcttactgaggcaactgttcaagca
gcagagaaagcagctacaggtgtaaaagagcgtagttcccgtttggcactagatattaac
attaaagcacctcttgtaataattccacaatcagcaatgtctgagaatgttctggtggct
gatcttggtctaatcactgtgaagaaccaattctttattgctaaaacaagagtgtgttat
aatcttccacctgttattgactccataacggtgaaattgagcgaactaaagatatacaga
tcctgctatgagcaaggttctttgcaaacggaagtacagttgctgcagccggtcaatctg
gaagtagctgttgaacgaaatttagctgctgcgtggtataatgaagttcctgatattgaa
atatctggccgactcaagcctatgaatctaattctcagtcaggaagatattaccacaata
ctgaggacactaaatgaaaatgcaggggaaagctctggtgcatcaacatcttttccagaa
ccgaaagaatcaattagacactgtagtgagatgcatagtacttcacagcactctgcaggt
gtaactgttgtgacatcagctgttgtggaattgcattcacctgtgcaaataaagacaaca
ctaaaactggacttcaaatttgactctctgactttagtgttgtatagtccaaattcaaaa
caggttaccactgtggatcagagagatgacagtttgaaacttgcagagtttaaattagtt
ttgatgtcagctgctctgaaaatgttatcagacggctcaatgaatgcttcagtcaaactg
acaaactgtacattagatgataaaagacagtcaatccagaaggctacaccaagaatggtg
gaaatgaaacatggatttgaaaagaaagttatggtggatataagctacaaacaggggaga
gatggcactgttcttgatgtgattgttcaagagatatacctttgcgcaagcatggagttt
ctacttactgtagcagatatatttctaagcgctaatgcagaaagtgctgctgcacagaga
aatctcaaacagtcgttacctttaaaggaccaagcatctgtgcagcctgtatctacaacg
gaaatgaacattgttgttaaaaatccagagattgtgtttgtggctgatttaacaagaagt
gatgctcctgcattggtagctacagcacagtgtgaggtcttcattaaaaatagccctgaa
aggtacaacatgacagctgctgttaaagacatacaaatgaaagcatgcccatttcttcca
gaaaaaaggaatgggaacattactacggtactacagccttgtgacttcttctttgaaatg
aaacagtcaggtactaatccacagacagctgatctaatgattaaatctctaacattaaaa
gtttcaccaataatcataaacacagtaattactattacatcagccctttctcaaactgca
gaaacaacagaagaagagattagtcaaattcctccagacttgtggaataagaaagatata
aaaaatctaaacatgtggtttcttgaagagacaaatgaaagtgaagataaaaatccaacc
actgagctggttcccacaggagagtcgttgaaaattaatatagaatctgtttttctaaca
cttgaagctggagttgggcatagaactgtaccaatgcttctagccaagtcctcatttgtt
ggagaagtcaagaactggagtactctaatcaacctacgttctcgtcttgagctagaggta
cactattttaacgagatgtttggggtgtgggaacctttgcttgaaccgttagaagttgag
aagactgatttattcaagccatggattcttgaaatcaagatgaagaaggcaaaaaaagtg
ctacttgaatcagatgatgaagatgaagaaaactacaaagttccagaatataaaacagta
ataaatgtttcctcaaaagaccagctcaacattacactatccaagtgtggactacaaatg
ttgagtaacttgggcacggcatttgctgaagcagctagtcaaacttcagacatcttcaaa
aaagaccgagcaccatttgtaataataaattctttaggacttcccatcatggtcttgcct
agtgatgcctttagtgtcctaaatgttgaatttggagcaaaaatatttcatttaaatgat
ggagagaacttaaatatggaatttgtcagaactaaaaatgagagtgaccagttcacagcg
atgacaacactgagtagcaagagattttacattcaaatctgtccacgtaatcattctact
gtggaaaagattccactgacaaaagtgggtcgatgtatttacagagtgagacatgaggaa
tctggtgttgaaaggtccattgtctgccagattgacactgttgaaggaagcaagatgata
actatacgttctcctattcagataaggaatcatttttcaatccccttaaatgtttttgag
gaaggaagatgcttagggactgctttaccaggaaacgaattcaacatacctttttcctct
tacagatccatactgagtttgcaaccactagccaatgaaaatgaagtggatggagaatat
catatgtgtgaaggaattacatttgatgacattataaaaaacgttgacagtttgttacag
aggaagtgccagtctgtggggtcaactaaccactctcttatcatcaatattgttcctgta
aaagattcactgacatcttcattatgtgcagaagatgagtgggattttccatacgttgtt
catttatggccttctgttcttctccacaatctgcttccttatgtaataactttttctgta
gagggtaatttgaacaaatatgacactctacaagaaggaggttcagcacagattcataat
gcagtcttggatgaaacaaaactagatttgcagttgcttaactatcttgatcaaaattgg
aaaagtgagtaccatataaagagcgatctacctgatatcagcttcacaacattttattgc
atcacggagctggataagactgaactggatattgctgttcatgtgacctacacaactggg
cagatggttatagccattcacagtccgtactggatggttaataaaactggtcgaatgctg
caatacaaagctgatggtattcaccgcaagcatcctccagattacaaaaagccactcctt
ttttctttccagcctaagaacttcctacaaaataacaaggtgcagcttagggtaactgac
agtgaactgtctgatcatttttcactggacactgttggaagtcatggttctgtgaaatgc
aagagtcataaaaaggaatatcaagttggtgtcaccataaacaacagcagttttaatatt
actagaattgtaactttcactccattttttatgatctcaaatagaagtaaatatactttg
gaagtagctgaagaaggcaaggaaaagtggattcccattgttttgcaacagtggtgtgag
aaacaatgggaaagggaacttagtggcatgtgcattcctttctggcctgaaaatgatgcc
aacaaactacttgttcgagtggaaaattctgatctcccaccaaagaagataaattttgat
cagcaagaaaactgtctcctactgcatttagacaacaagcttggaggaattacagtggat
gttaacctgacggaacactctacagtgattaccttttctgattaccatgatggtgcagct
ccgtttctgttgataaaccatactaacgaggaaattattgagtatggacaaagctccctc
agtgaattggaagactgccttcagccaaataaggcagtactgtatacctgggcagaccca
gcaggatctagaaaattgaaatggaaatgtggaaatagaactgaggaaatttccccaaaa
gaggacaaaatggaaatactcagagtggatagcagaaaagctgtctatttaatgtcattt
tatgaagggttgcagcgtattgtcctgatcactgaagatgagaatgtatttaaattgaca
tatgaaagtgtaaaagcagaactagcagaacaagaaatcgttctgtctttgcaagatgtt
ggaatttcattgattgataattactcaaaacaagaggtgtcctacattggaattacaagt
tctgatgtggtatgggagacaaaacccaagaagaagtcaagatggagaccaatgagtgta
aagcaaattgataaattagaacaagaattcaaagactacagtgaactaagtccttcagaa
aataagattattgagctggaatcgaatgtttcggtatgtttaactcctaatggaatggac
atgaaaattcaacaaccaaatgagattcctatcagaaggaattatctaccagctttaaaa
gtggaatacagttcatctgcacatcagaaatctttcagaattcaaatttacaggatacag
atacaaaaccagattcctggagccatatttccctttgtgttctatcctattaaacctcca
aagtccatcaccttggattcagcaccaaaaccatttactgatgtcagtattgtcatgaga
actgcaggacattcacaaatatctcatattaagtattttaaagtcctgattcaagagatg
ggtctcagattagatcttggcttcctgtatgcacttgttgcattatttacacggactgat
ttgtcaagtgagcaagagctagaacagttcaaaaaggatgttgaatctcttcaagaagaa
ctgatgagtgtgtcgtcaatggatacatcacaaatcagcttgtatgaatactttcatatt
tctccaattaagttacacttaagcttttcactcagtacgggtggagaagacagtaacaaa
gaagaaagaaagaatgaattgataccacttcagtccttgaatctcctgctgaagagtata
ggggccaccctcacagatgtacaagatattgtttttaagttggcattctttgaactcagg
tatcacttctgtactacacaacagctccaatcagcagttgtaaggcattattcgaaacag
gctattaaacagatgtacgttcttattcttggccttgatgtcttgggtaatccttttgga
ttcataagaggcttgtctgaaggagtagaagcattcttctatgaaccgtaccagggagcc
atccagggccctgaggaatttatagaaggaatggcattaggacttaaagcactagtaggg
ggagctgttggtggattagcaggtgctgcctcgagaatcacaggtgctgtggcgaaagga
gttgctgcaataactatggatgaggattaccagcaaaaaaggagagaagctatgaataaa
cagcctgctggtctgagagagggtatcactcgtggtggaaaaggattagtttctggtttt
gtcagtggcataacaggaatagtgacaaaaccaataagaggagctcaggaagaaggagca
gctggttttttcaaaggtgtcggaaaaggcttagtgggagcagtagctaggcctactggt
ggaatcatagacatggcaagcagcacatttcagggtattaaaaaagttgcagattcatca
gaagatgtgataagcctgcgcccacctcgcttctttggtgaagacggagttattagacct
tacagattaagagatggaactggaagtcaaatgttacagaaaattgaaaatggaagattt
tcaaaactcagatatattgcacatgctatggtcaacagtacagacctgttaatggtaacc
aaaagtggtgttttatttgtgacaaaagggacatttggacagctaatatgtgaatggcaa
tacactttcgatgaatttaccaaagagccattcatcgttgatggtcggagattgcgcatt
gaggccaaggaacgagttaagtcagtgttccatgccaaagaatttggaaaaattattaat
tttagaagtccagaggatgctaagtggatactttctaaactggaagaagtgagagagaat
cagccaaaattgtaa
DBGET
integrated database retrieval system
