Empidonax traillii (willow flycatcher): 114072652
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Entry
114072652 CDS
T05887
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
etl01001
]
114072652 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
etl04121
]
114072652 (TRIM28)
Enzymes [BR:
etl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114072652 (TRIM28)
Protein kinases [BR:
etl01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
114072652 (TRIM28)
Ubiquitin system [BR:
etl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114072652 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_5
PHD
ANCHR-like_BBOX
Unstab_antitox
HEAT_SCC3-SA
Motif
Other DBs
NCBI-GeneID:
114072652
NCBI-ProteinID:
XP_027766326
LinkDB
All DBs
Position
Unknown
AA seq
823 aa
AA seq
DB search
MSEPEAAAAGTGPGTAGMGLGTPRKGLEAEPLGPLDLLDHCGRCRKRLSPQRDPRLLPCL
HSVCGTCLGGDGAVFECPVCHHQCPLGDILDNFFLQDSGAGATAGPEPLQSCTSCEDNAA
ATRFCNDCSEPLCDTCVQAHLRVRYTRGHSVRDISSALPCSVPSLGPCPEHPEEPRDHFC
STCATLMCRLCQLSAHQGHRSRSIPEAVPTEQALLLDLSRCLGTKLSVLQHCQRHLRGLQ
RRGSEAQQRLQVEVKMAILQVMRELNKRGKVLLGEAQKVTEAWQEELERRLQALAELQKH
HELVMAFVSQAMSTSRGTALLLSYNLIHSQIQRSLRVPVEPEEHLWELKFQWDLPAWTKS
AENFGTIISEWPLPRSGSPTPAMRPRDPPPPTQVVSNGQVTPRLLPQPPQNGAGGEAQEA
PWGSPPIAGGALGPPLLPQFSPSIEGLECPELSPPHLEPPPETPELAATGPPGNTITGGD
RRKPGNSPREEKFKKLVIKRRAPQGPPPLPPKVPRVSLERLELGLALDPALPPPAFRVLP
GPSAGQFSVIVIEQGGTPQGTPQGPVQGEQPQGNIPVKEEPQELAISDPGDTKPVGLLPP
PPVGSVPGGVPTAGVPGGAWSCRVCGRAGAVVMCDRCQRCFHLHCHLPALLDVPSPDWTC
LLCQELPPPSEVPPGQGSPPHLSPLDQQRCELVLLELLCHEPCRALQRPCGPTEGGPALD
LTLMRAKLQEKLSPPYRTPEEFARDAWGVLGQLQGTTEDKAGLQSLLSVQRFLESHLSRV
FGDRKFWDHPGTPPLPEPPPRGCWDHPGSPPASWDPSSPSPGS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagcctgaggcggcggcggccggcacgggcccgggaacggccgggatgggcctg
ggaacacccaggaagggcctggaagcggagcccttgggtcccctggacctgctggatcac
tgcgggcgctgccggaagcgcctgagcccccagcgggacccgcggctcctgccctgcctg
cactcggtgtgcgggacctgcctcggtggagatggagcggtgttcgagtgccccgtgtgc
caccatcagtgtcccctgggggacatcctggacaactttttcctgcaggacagcggggct
ggagccaccgcagggcctgagccccttcagagctgcaccagctgcgaggacaacgcggcg
gccacgaggttctgcaacgactgctccgagcccctgtgtgacacctgtgtgcaggcccat
ctcagggtcaggtacacccgaggccactccgtcagggacatcagctccgccctgccctgt
tctgttccctctctgggaccgtgcccagagcacccggaggagccccgggatcacttctgt
tccacctgtgccaccctcatgtgccgcctgtgccagctcagcgcccaccagggccaccgt
tcccggagcattcccgaggcagttcctacggagcaggcgctgctgctggatctgtcccgg
tgcctcggcaccaaactctcggtgttgcagcactgccagcggcacctgcgcggcctgcag
cgccgggggtcggaggcgcagcagcggctgcaggtggaggtgaaaatggccattctgcag
gtcatgagggagctcaacaagcgtggcaaggtcctgctcggggaggcccagaaggtgacg
gaggcgtggcaggaggagctggagcggcggctccaggcactggcggagctacagaagcac
cacgagcttgtcatggccttcgtgtcccaggccatgagcacgtcccggggcactgcccta
ctgctctcctacaacctgatccattcccagatccagcggagcctccgtgtcccggtggag
cctgaggagcacctgtgggagctgaaattccagtgggatcttcccgcctggaccaagagc
gccgagaactttggcaccatcatctcggagtggcctctcccccgctctgggagccccacc
cctgccatgaggccccgagacccccccccacccacacaggtggtgagcaatgggcaggtg
acccccaggctgctcccgcagccaccccagaacggggctgggggagaagcacaggaggcc
ccctgggggtcccccccaattgcggggggggctctgggtccccccctcctgcctcagttc
tcccccagcatcgaggggttggaatgtcctgagttgtcccccccacacctggagccgcca
ccggagacccctgagctggcagccaccggcccccccggaaacaccatcacaggaggggac
aggaggaaacctgggaattccccccgggaggagaagtttaagaagctggtcattaaacgg
agggctccccagggtccccccccactcccccctaaggtgccacgggtgtcactggagcgg
ctggagctgggcctggcgctggacccggccctacccccgcccgccttccgcgtcctgccg
ggaccctcagccgggcagttcagcgtcatcgtcatcgagcagggtggcacgccccagggg
acaccccaggggccagtgcagggcgagcagccacagggaaacatccccgtcaaggaggag
cctcaggaactggccatcagcgaccccggggacaccaaacccgtggggctgctgccccct
ccccctgtggggagtgtccctggaggtgtccccacggcgggtgtccccgggggggcgtgg
agctgccgggtgtgtggccgcgcgggggccgtggtaatgtgtgaccggtgtcagcgctgc
ttccacctgcactgccacctgcccgccctgctcgacgtgcccagccccgactggacgtgt
ttgctgtgccaggagctccccccaccctccgaggtccccccgggacagggatccccaccc
catctgagccccctggaccagcagaggtgtgagctggtgctgctggagctgctgtgccat
gagccctgcagggccctgcagcgcccatgcggccccacggaggggggtcctgccctggac
ctgaccctgatgagggcgaagctgcaggagaagctgagccccccgtacaggacccctgag
gagttcgcaagggacgcctggggggtcctgggacaactccaggggaccactgaggacaag
gctgggctgcagtccctgctaagtgtccagaggttcctcgagagccacctgagccgcgtc
ttcggggacaggaaattctgggaccacccagggacccccccactgcctgagccccctccc
cgggggtgctgggaccacccggggtcacccccggcatcctgggaccccagttctccttct
ccagggtcctga
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