Empidonax traillii (willow flycatcher): 114073728
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Entry
114073728 CDS
T05887
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
etl04040
]
114073728 (SCN1A)
Ion channels [BR:
etl04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
114073728 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
SieB
Lustrin_cystein
FraC
New_glue
ATP-synt_B
PSD5
Motif
Other DBs
NCBI-GeneID:
114073728
NCBI-ProteinID:
XP_027767274
LinkDB
All DBs
Position
Unknown
AA seq
1978 aa
AA seq
DB search
MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIA
ENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPSA
GGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRISGSFHVSMDFLEDPALRER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYNKDPNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLQQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYLAPILNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVS
YIIISFLVVVNMYIAVILENFGVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKL
SDFAAALEPPLHLPKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQ
MEDRFMASNPSKASYEPITTTLKRKQEEVSAVIIQRAFRRHLLKRTVKQASFIYNKNKTE
GGADQGMKDEILIDKLNENSFTEKTDITASTAVCPPSYDRVMRPVKEKHEKEDKDGQK
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacaacgcattgctgcagagaaagctaagaatcctaaacaagat
cgtaaagacgatgacgaaaatgggccaaaaccaaacagtgatttggaggcaggaaaaacc
ctcccgtttatatacggcgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattatatcaacaaaaaaacctttatagtattgaataaagggaaggcaatcttc
cgattcagtgccacctctgccctgtacattttaactcccttcaatcctcttagaaaaata
gctattaaaattttggtacattcattatttagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtatacg
ttcactggaatttacacatttgagtcactaataaaaatcattgcaaggggcttttgctta
gaagattttacttttcttcgggatccatggaactggcttgatttcactgtcattaccttt
gcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagta
ttgagagctttgaaaactatttctgtaattccaggcctgaagactattgtgggagcccta
attcagtctgtgaagaagctctcagatgtgatgatcctgactgtgttttgtctgagtgta
tttgcactgatagggctgcagctgttcatgggcaacttgaggaataaatgcctgcagtgg
cctccagaaaactttactttggaaacaaatataacttcccagcttaacagcaccatagct
gaaaatggtacactggttaattcaacggtgactccgtttgactggaaggggtacattgaa
gatgaaagtcatttttattttctggaaggccaaaatgatgctctgctttgtggaaatagt
tctgatgctgggcagtgcccagaaggatatacatgtgtgaaagctggtagaaaccccaat
tatgggtacacaagttttgacaccttcagctgggctttcttgtcactatttcgcttgatg
actcaagacttctgggaaaacctttatcagttgaccctgcgtgctgctgggaagacatac
atgatattttttgttctggtgatttttctgggctctttctatctgatcaacttgatcctg
gctgtggttgccatggcctatgaagaacagaatcaggcaaccttggaagaagcagagcag
aaagaggcagaatttcagcagatgctggagcaactgaagaagcaacaagaagcagctcag
gcagcagcagtggcagcagcagcagtaacagcatctgcagagtccagggagcccagtgct
ggaggagaagcaggagggctctccgaaagttcctcagacgcatcaaaattgagctcaaag
agtgcaaaagagaggagaaatagaaggaaaaaaagaaaacagaaagaacagtctggagga
gaggaaaaggatgaggatgaatttcacaagtctgagtcagaagacagcatcagaaggaaa
ggtttccgattgtctattgaaggcaatagactgacatatgaaaagaagtattcttctcca
catcagtctttgctgagcattcgcggctccctcttctccccaaggcgcaacagcagaaca
agtcttttcagcttcagaggtcgagcaaaggatgttggatcagaaaatgactttgctgat
gatgagcacagcacttttgaagacaacgacagcagaagagactctctctttgtgccgcgc
agacacggggaacggcgcaacagtaacattagtcaggccagtaggtcatccaggatgctg
gcagtgtttccagtgaacgggaagatgcacagcactgtggattgcaatggggtggtttcc
ctggttggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacgacagaaacagaaatgaggaagaga
atatcaggctcttttcacgtttctatggacttcctggaagacccagctttaagggagcga
gccatgagtattgctagcatcctcacaaacactgtggaagaactcgaagaatcaagacag
aaatgtccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagtcca
cattggctaaaagtaaaacatattgtcaacttagtggtaatggacccatttgttgacctg
gctattacaatttgcattgttttaaatacactctttatggccatggaacattatccaatg
accgacgaattcaataatgtgctttcagttggaaatctggtcttcactggaatcttcaca
gcggaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggctgg
aatatttttgatggtttcattgtaacccttagcttggttgagcttggtcttgcagatgtg
gaaggactatcagttcttcgatcattcagattgttgcgagttttcaaattggcaaaatct
tggccaactctaaatatgctgataaaaattatcggtaattctgtgggagctctggggaat
ctgaccctggtgctggccatcattgtgttcatttttgctgtagtcgggatgcagctgttt
gggaaaaactacaaggaatgtgtctgcaaaattgcaagtgactgtgtccttccacgctgg
cacatgcaagactttttccactcttttttgattgtattccgagtgctgtgtggagaatgg
atagaaacgatgtgggactgcatggaggttgctggccaagccatgtgccttacagtcttc
atgatggtcatggtgattggaaacctggtggtactgaacctatttttggccttgctcttg
agttcatttagtgcggacaaccttgctgtgacagacgatgataatgaaatgaataatctc
caaattgctgtagcaagaatgcagaaaggcatagattatgtgaaaagaaaagcacgtgaa
ttcatccaaaaagcttttgttaaaaaacaaaaagctttagatgaaatcaagccacttgaa
gatctgaacaacaaaaatagctgtatttctaaccatacaactgtggaactgagcaaggac
catgattataataaagatccaaatggaaccaccagtggtataggcacaggcagcagcgtg
gaaaaatacataattgatgaaagtgattacatgtcattcataaacaacccaagcctcact
gtgacagtgcccattgctgtgggtgaatccgactttgaaaatctaaacacagaggagttt
agtagtgagtcagacctcgaagaaagcaaagagaagttaaattcatctagttcatctgaa
ggtagcacagttgatattggacttcctgcagaagaacaaccagaagctgaacctgaagaa
gcccaggagccagaagcctgcttcacagaaggctgtgtaagaaggttcaagtgctgtcaa
gtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttcagg
attgtcgaacacaactggtttgagactttcattgtctttatgattctcctcagcagtgga
gctctggcttttgaagacatatatattgaacaacgaaaaactatcaagaccatgctggaa
tatgctgacaaggtcttcacttacatcttcatattggaaatgctgctgaagtgggtggcc
tatggctaccaaacatactttactaacgcctggtgctggctggacttcctgattgtcgat
gtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtacgcagctattgactcaagagacgtattacagcaacccaagtat
gaagacaacctgtacatgtatttgtattttgtcatctttattatttttgggtcttttttc
accctgaacttgttcattggtgtcattattgataacttcaatcagcaaaagaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
ctgggatccaaaaaaccacaaaaacctataccaagaccagggaataaattccaaggcatg
gtctttgattttgtgacacagcaagtatttgacatcagcatcatgattcttatttgtctt
aacatggttaccatgatggtagaaaccgatgaccagagtaaagaaatggaaaatatttta
tactggataaacctggtgttcattgttcttttcactggagaatgtgtcctgaaattaatt
tcacttcgccattactacttcactataggctggaacatttttgattttgtagttgtcatt
ctctcaatagtaggaatgtttttagctgagatgattgagaagtacttcgtgtcccccact
ctattcagagtcatccgacttgccagaatcggtcgaatcctgcgcctcattaaaggcgcc
aagggaatccgcactctgctttttgctttgatgatgtctcttcctgctctgttcaacatt
ggtctgctgctcttcctggtcatgttcatctatgccatatttggcatgtccaactttgcc
tatctcgccccaatcctgaacagtggggagcccgactgtgaccctaacaaggctcatccg
gggagctctgtgaaaggtgactgtggcaacccttctgttgggatctttttctttgtcagc
tacatcatcatctcctttctggtagtggtgaacatgtacattgctgtgattttggagaac
tttggtgttgctaccgaagaaagtgctgaacctttgagtgaggatgactttgagatgttc
tatgaggtctgggagaaatttgatcccgatgcaacacaattcatggaatttgagaaactg
tctgattttgcagcagcacttgagcctcctcttcatttacccaaaccaaacaaagtgcag
ctcattgcgatggatctgcccatggttagtggtgacaggattcactgccttgacatcctg
tttgctttcacaaagcgtgttttgggggagagtggagagatggatgccctcagaatacag
atggaagatcggtttatggcatccaatccttcaaaagcttcctatgaaccaattacgact
acattaaaaagaaaacaggaggaagtatctgctgttattatccagcgtgctttcagacgt
caccttttaaaacgaacagtaaaacaagcctcctttatctataacaaaaacaaaaccgaa
ggaggggctgatcagggtatgaaagatgaaatccttattgacaagttaaatgaaaactca
tttacagagaaaactgatataactgcatcaacagcagtttgtccaccttcttatgatcgt
gtaatgaggccagtcaaagaaaagcatgaaaaggaagataaagatggtcagaaataa
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integrated database retrieval system
