Empidonax traillii (willow flycatcher): 114073798
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Entry
114073798 CDS
T05887
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etl03021
]
114073798 (SETX)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114073798 (SETX)
5.6.2.5 RNA 5'-3' helicase
114073798 (SETX)
Transcription machinery [BR:
etl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114073798 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
RNA_helicase
NAT10_TcmA_helicase
Lip_A_acyltrans
Motif
Other DBs
NCBI-GeneID:
114073798
NCBI-ProteinID:
XP_027767431
LinkDB
All DBs
Position
Unknown
AA seq
2760 aa
AA seq
DB search
MSTCRWCTPSGPDTTEFLKHYATEQLSQEEFEGSNDDLSYCLECVVEYHKARQECPRLHK
DLWDLETARLVAHMEKSMQEEGGEEDELFLVDENGETRLSGYMGPDFENNLRVPLLEILK
YPYLLLHERVSELCVEVLCRMELGHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMYEKGKLILLPAHLYDTTNYKNYWL
GICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAAGDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSESYKNEIKNIRNSFMRTKTEPESDYGDDMITCSQIVYN
YNTEKPQKDSGWKAAICPEYCPNMYEDMQTLANVLQSNIGKDTRVHPSTFLWFIPFVQSL
MDLKELGVAYIVEVIHYLCSEIKDILIENLQQCDRISEFFLLILVCIVELHRNKKCLHLL
WISSQEWVEAVVRCATLPARVFTWHTDKTSGPCGKGSSAGSFQASNSVQHACVQLIRSLL
KEGYQIGQQALCKRYLDKLNLLLRGNLSMGWQLNIQETQELQTCLKQVLRSIKGRALSAS
LAKGSNSNSTALPTVSLKQERNVGDDGFRASAHERGDLYSPSVISKESGDCQGNLFPRRK
NAWEEESRDAPKSSTSWTSTGGVLTDIKKEPDDSAAQEFIFPQNSLAAKLRRKVQENRND
DSVAGKCNMDNQGFKPNAQHSDFRRGRELEVKEEAGPSTACYLSAQTHLGSSSSRNCRSV
QETSVNSLFQSRVPTKQGSKETSLDCSNCPKNGPGMQEKEDNSIDTDMPSSDWDQPNFND
LAKYDCKHQISNTFCTTKVSANGCFPSRSENKRDVSNPALQIRPLSVKHESSDRLLTFSE
YFKRENSSEGKEEDFGKMSSEDDTLSDSQVDRELSKLSLAAYAKSVNFPLESSQESSVYQ
NLSDIRRRVKGAVRSSNEGQGTRSLCDGDCRDNQVIIISDSSDEEKGAGDKEEAKTKDEN
ACPAKLPSFSNSTSDTDVKMESESPRPPLSMDDCDSQFFEFETDAEVFSAWQDTQAYATE
ATQEYKQGDVSTAVDSSSDDFLNSSINEWGYDLDYLSDDTMQETASSVEKQIEDVSHQKE
ADDKKEATNLMLQESVRKEDAKGQLEEFADKGAAAEGFALGSPLPEPRASTSTTSLASKL
AWKKNTTSPPKATAAKPKLAITAQRSPKNPAVKTTQPKKPLPSSASKPPEPGRSMPAVVP
PRRARQRPAPTSTAEKLGLKKGPRRAFELSQPSRESVAQLRSHGKAAGRVGAAQRLRTKL
IDAQSLSVKRNKKLLACQDRQFFRQMRPKRSARVRSPAGSSESRNRRGVRVCVKPVGQKA
PSFELAFGENQREETAGPSAGERKFGSLSVEGGACASKTPGSSDWNRKWEDSSGIAPVPM
DSSLSYTALADDKDESAGKSCTVLPENKVKTSSGCKSYESNEDDDDDDNLFLTQLDPVDM
ELCSQEESFEDTAVDTKTPEETNAAENPQQNESPAIPTCKHEGCVEKVEKAGESCSEHTA
TSSGADHVFAKPSLLPPKARKPSTTKIFSSASSSRNAAFSKDLEDVKKPPPPSKSKVNAA
KPAVVRPPLPRAYAPVGNQPCRAPGLSHVPRPQLSNSVLQSQNRQYDNALNISRGSARGV
CSSFLGAQQRDHSIFVNQVLTWTYEMFANFSYFGTPNHLLQSVVASVPVQFQDYNDYFNT
FFPLMMLNAFETLAQEWVENQKAREKSYCFTLENFSADMNTAHFTAHFREGDLARQLHPK
EDDLILLVVQMEKDTFGEEGGMENHVVNHVGLVTRFSRASGYTARQQEQDSVCHLTVQTR
GNLSFCIRKQVKCVVVGSLVTTHRTFKGLLLLSRSPLARPIINPCYNDFCPRDLPVVASG
SAALYVNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKTIVGLLSRVLRENT
RNEKTARKKNSKMKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNKQEPLGNCGDIKLVR
LGAEKAINNEVRGFSLDKQVEHRMKRKPGDSDQDIQKKKAALDQKLDMLSRQRAMHRCEK
RESQMLDEEIARLAKERQQLASQQKEVRGHSQKVQADIILESDIICCTLSTSGGSLLESA
FARQGHDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQLPPTVKSVKAQQYGYD
QSLMARLQRLLEEQVQRNVLRSLPVVQLTVQYRMHPDICLFPSNYVYGKTLKTAKAIEEN
RCSSDWPFQPYLIFDVADGREERDCDSYSNPREVKLVMELIRTIKEKRKDLGVRRIGIIT
PYSAQKKRIQGQLDSVFRNNSPGEVDTVDAFQGREKDCIIVSCVRANSSEGSALAYAQAN
STKGSIGFLASLQRLNVTITRARFSLFILGRLQTLMEDKNWNHLIQDAQKRGAIIRTAEK
NYKKDALKILKLRPAVQPPAKAGTVTAPLVQAGPNSGKRAELTNPGSSPREAAAGSGHAV
PQGSRGPPQPPGAPATDSRRGSVPASLGTPAGDSRRANVPVPVGTQGADSRRGSAPVPPG
APATDSRRGSAPASLGSPAGDSRRGSAPVPVGAAALPANPEKPRDPRLASLASRTETKGK
EQQALKDGSWSAQSNPGSTSQQGLNAPSAARDQISRTENLRKAQQATGQCNVLSTSPCTA
QHEGDRRGAVPKNGSKALSEGGHSNSSECNKDCRGLTRRPSEELPEDTESSNAKRRKIFH
NT seq
8283 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcaccccgagtggccctgacaccaccgagttcctgaagcac
tatgccactgaacagctgtcccaggaggagtttgagggatccaacgatgatctcagttac
tgcctggagtgtgtggtcgaataccacaaggcaaggcaagagtgcccaaggttgcataag
gacctgtgggacttggaaacggcccgtcttgttgcccacatggagaaatccatgcaggaa
gaaggcggggaagaggatgagttgtttctagtggatgagaatggagagactcggctgtct
ggttacatgggccctgattttgagaataacctgcgagtgccccttctagaaatcctgaaa
tatccctacttgctgctgcatgagagagtcagtgagctgtgtgtggaagtgctctgtagg
atggaactcggccacgactcctttcaggtctttgaaaaatacccaggaatttatctcttt
ttggtgcaccccaatgaggtgattcgccgctgggccatcctaacagcaaggaatttaggg
aaggttgacagggatgattactacgacttagaagaagtgctgacttgtttgttcaaagtt
attgagctggggctttttgagaatccagatatttacagctcttcaatgtacgagaagggt
aaactcatccttctgccagcacacttgtatgatacaaccaactacaagaattactggctg
gggatttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttgctgggc
ccagacaaacagaatgatttcatgcagtccatacttcacactatggagaaagaagcagct
ggtgattccactgaccccttctggcctgccctgcattgtttcatggttattttggatcaa
ctcggatctaaagtttggggacagctcattgatcctgtccaagcctttcaaaccattatc
aacagtgagagctacaaaaatgaaatcaaaaatatacgcaatagctttatgaggacaaaa
actgaaccagagtcagactacggtgatgacatgattacttgcagtcagattgtgtacaat
tacaacacagaaaagcctcaaaaggactctggctggaaggctgccatctgcccagagtac
tgccccaacatgtatgaagatatgcaaacactggctaacgtgctgcagtccaacatcggc
aaagacacgcgtgtccatcccagcaccttcctctggttcatcccttttgtccagtcgctc
atggatctcaaggaattgggcgtggcctacatagtagaggtcatccactacctgtgctcg
gaaatcaaagatattctcattgaaaacctccagcagtgtgacagaatctcggagtttttc
ctcctcatcttggtgtgcatcgttgaactccacaggaataaaaaatgcctgcacttgctg
tggatcagctcccaggagtgggtggaagcagtggtgagatgtgccacccttccagccagg
gtgttcacgtggcacacggacaaaacctctgggccctgtgggaaaggctcatctgcagga
tctttccaagcctccaactcggtgcagcacgcctgtgtgcagctcatacggagcctcctc
aaggagggctaccagattgggcagcaggccctctgcaagaggtacctggacaagctcaac
ctcctcctgcgaggaaatctctctatgggttggcagctgaacatccaggagacccaggag
ttacagacgtgcttgaagcaggttttgaggagtataaagggcagagcgttgagtgcctct
ttggccaaagggagcaattcaaactctacagctttgccaactgtttctctaaagcaggag
aggaatgtgggcgatgatggattcagggcgagtgcacatgagagaggtgacctttattct
ccatctgtcatatcaaaggaaagtggagattgtcaagggaaccttttccctagaaggaaa
aatgcctgggaagaggaatctagagatgcacctaaaagttcaacatcgtggacatccaca
ggaggcgtcttgacggatattaaaaaggaacctgatgattcagcagctcaggaatttatc
ttcccacagaactctttggcagcaaaactacgtagaaaagttcaggaaaataggaatgat
gactctgtggcagggaaatgcaatatggataatcagggctttaagccaaatgcccagcat
tcagatttcagaaggggcagagagctggaagtcaaagaggaagcaggaccctcaacagca
tgttatctatctgctcaaactcatcttgggtcttcatcttcaaggaattgcagaagtgtg
caggagactagtgtaaacagcttgtttcaatccagagtccccactaaacagggatcaaaa
gaaacatcactggattgctctaactgccctaaaaatggacctggtatgcaagagaaggaa
gataacagtattgacactgacatgccaagttcagactgggaccagcctaatttcaatgac
ctggctaaatacgactgtaaacatcaaatttcaaacaccttttgtactactaaagtttca
gcaaatggctgttttccatctaggtctgaaaacaagagggatgtgtccaaccctgctctt
cagatcaggccactgtccgtgaagcatgaatcaagtgacaggttgttgacgttttcagaa
tatttcaagagggaaaacagttcagaggggaaagaagaggattttgggaagatgtcttct
gaagatgatactttatcagactcccaggttgatagagaactcagtaaattatctttagct
gcttatgccaaaagtgtcaattttcccttggagtcaagccaggaaagctcagtgtaccag
aatctaagtgatattaggaggagagtgaaaggtgctgtaagatcttccaatgaaggccaa
ggaaccaggtctctctgtgatggagattgccgtgacaatcaagtcattataatttcagac
tcttctgatgaagaaaaaggtgcaggtgacaaggaggaagcaaaaaccaaggacgaaaat
gcttgtcctgcaaagctgccttcattttccaacagcacttctgatactgatgtcaaaatg
gaatcagaatctccaaggcctcccttgtcaatggatgactgtgattctcagttctttgag
tttgaaacagatgctgaggtgttttcagcttggcaagatactcaagcctatgctacggaa
gcaacccaggagtacaaacaaggtgatgtttcaacagcagttgacagtagttcagatgac
ttcctgaacagtagcataaacgagtggggttatgatctggattacctcagtgatgatact
atgcaagaaacagcaagctcggtagaaaagcagatagaagatgtttctcatcagaaagaa
gctgatgataaaaaagaggcaacaaacttgatgttgcaagaatctgttagaaaggaagac
gcaaaagggcagctggaggaatttgcagacaaaggtgctgctgctgaaggcttcgccctg
ggctcaccattgcctgaacccagagcatctacatctaccacctcactggcttcaaagctg
gcctggaagaaaaacaccacgagccccccgaaggccaccgcggcaaaacctaaattagcc
ataactgcccagaggagccccaaaaaccctgctgtcaaaacaacccaacccaaaaaaccc
ctcccttcaagcgcctccaaaccccctgagcccggcaggtccatgcctgccgtggtgccc
ccgaggagagcccggcagcgtcctgctcccacctcgaccgcggagaagctggggctgaag
aagggcccccgccgagccttcgagctgtcgcagccgtcgcgggagagcgtggcccagctg
cgcagccacggcaaggccgcgggcagggtgggcgccgcgcagaggctgcggaccaagctc
atcgacgcccagagcctgtccgtgaagcgcaacaagaagctgctggcctgccaggaccgc
cagttcttcaggcagatgaggcccaagagaagcgcccgggtgaggagtccggcggggagc
tctgagagcaggaacagaagaggcgtcagggtgtgcgtgaagcctgtgggacaaaaggct
ccgagttttgagctggcgtttggggaaaatcaaagagaggaaactgctggtccgtctgct
ggcgagagaaaatttggaagcctgtctgtggaagggggggcgtgtgcctctaaaacgcct
ggctcttcagactggaacagaaaatgggaggatagcagtgggatagctcctgtccctatg
gattcaagtctgtcttacactgcacttgcagatgataaagatgaatctgcaggaaaaagt
tgcactgtcctgcctgagaacaaggtgaaaacttcaagtggttgtaaatcatatgaaagc
aatgaagatgatgatgatgatgataatctgtttttaactcagttagatcccgtggacatg
gaattatgttctcaggaggaaagttttgaagatactgctgtagatactaaaaccccagag
gaaacgaatgctgctgaaaaccctcagcagaacgagtccccagctattccaacatgtaaa
cacgaaggctgtgtggagaaagtggaaaaagcaggagagtcctgcagtgaacacacagcc
accagctcaggagcggaccacgtgttcgccaaaccttctctgctacctcccaaagccaga
aaaccttccactaccaagatcttcagctcagcaagctcctcccgcaacgccgccttcagc
aaggacctggaggacgtcaaaaagccgccgcctccttccaaaagcaaagtgaacgcggcc
aaacccgccgtggtcaggccgcccctcccgagagcgtacgcgccagtgggaaaccagccg
tgcagggctccaggcctcagccacgtacctcgaccccagctgtctaacagcgtcctgcag
tcgcagaacaggcagtatgacaacgctctgaacatctccagaggctctgcacgaggagtg
tgttcctccttcctcggcgctcagcagcgcgatcacagcatcttcgttaatcaggtcctg
acgtggacttacgagatgttcgccaacttcagctacttcggaactccaaatcacctcctg
cagtctgtggtagcctctgttcctgtccagtttcaggactacaatgactattttaatacc
ttcttccccttgatgatgctgaacgcctttgaaacactggcacaagaatgggtagaaaat
cagaaagcaagagagaagagctactgcttcaccttggagaacttctctgctgacatgaat
acagcacattttacagctcattttcgagagggtgacttggcaaggcagcttcatccaaag
gaggatgacttaatccttttggtggtccagatggaaaaagacacctttggggaagaaggt
gggatggagaaccacgtggtgaatcacgtcgggctcgtgacacgattttctcgtgcgtcc
ggttatacagcgagacaacaggagcaggacagtgtctgtcatctcactgtgcagaccaga
ggcaacctgtccttctgcatccgcaagcaggtgaagtgtgtggtggttgggtccctggtg
accacacaccgaaccttcaaaggtttgctgctgctgagcaggagtcccctggccagaccc
atcataaacccctgctacaacgacttctgccccagggatctgcctgtggtggcctcagga
agtgctgctttgtatgtgaatgaatacaatgaagatcaaaagagagccattgagacagct
tatgccatggtaaagcaacacccagggctccccaagatctgcctcatccatgggccacct
gggacagggaaatcgaaaactattgtaggacttctgtcccgtgtcctgagagaaaacacc
aggaatgagaaaacagctcggaagaagaattccaagatgaagccaaaccgcttcctggtg
tgtgcaccgtccaatgctgccgtggatgagctcatgaaaaagatcatcgtggcgttcaag
gagaaatgccagaacaaacaggagcctttggggaattgtggtgacatcaaattagtgcga
cttggtgctgaaaaggccatcaacaatgaagtccggggatttagcctggataagcaagtg
gaacacagaatgaaacgaaagccaggggactctgaccaggatattcagaagaaaaaagca
gctctggatcagaagctggacatgctgtcccggcagcgtgccatgcacagatgtgagaag
agagagagtcaaatgttagatgaggaaattgccagacttgcaaaggagagacaacaactt
gcttctcagcaaaaggaggttcgtgggcactcccagaaggtgcaggcagacatcatcctg
gagtctgacatcatctgctgcaccctgagcaccagtggggggagtctgctggaatcggct
tttgcacggcaaggccacgaccccttcagctgtgtcatcgtggatgaggcagggcagtcc
tgtgaggtggagacgctgattcctctgatccatcgctgtaataaacttgtccttgttgga
gatcccaaacagctccctcccactgtaaaatcagtaaaagctcagcagtatggctacgac
cagtccttgatggcccgactgcagaggctgctggaggagcaggtgcagaggaacgttctg
aggagcctgccggtggtgcagctcacggtgcagtacaggatgcaccccgacatctgcctc
ttcccatccaactacgtctatggcaaaaccctgaagactgccaaagcaatagaagagaac
agatgttcttcagactggccattccagccctacctgatttttgatgtagcagacggtcgt
gaggagcgagactgcgactcttacagtaacccccgggaagtgaagctggtgatggaattg
attagaacaattaaagagaaaaggaaggatctgggtgttcgtcgcattggaatcatcacc
ccttacagtgcacagaaaaagagaattcaaggtcagctggacagtgtgtttaggaataac
agcccaggagaagtggacacagtggatgcgttccagggtcgagagaaggattgtatcata
gtgtcctgtgtgcgggcaaacagctctgaggggtcagcactggcatatgcccaggcaaac
agcaccaaaggatccattgggttcctggcaagtcttcagcgcctgaacgtcaccatcacc
cgagccaggttcagcctcttcatcctgggcaggctgcagaccctcatggaagataaaaac
tggaatcacctgattcaggatgctcagaaaagaggtgccataatcaggacagcagaaaag
aactacaagaaagatgctctgaagattttgaagctcaggccagcagtgcagcccccggcc
aaagcagggacagtgacagctcctctggtgcaggctggtcctaacagtggcaagagggct
gagctcacaaatcctgggagcagcccacgggaagctgctgctggctctggccatgcagtg
ccccaaggaagccgagggcccccacagcctccaggggctccagctacagattccaggagg
ggcagtgtccctgcatccctggggactcctgctggagattccaggagggccaacgtccct
gtgcctgtggggactcagggtgcagattccaggaggggcagtgcccctgttcccccgggg
gctccagctacagattccaggaggggcagtgcccctgcatccctggggtctcctgctgga
gattccaggaggggcagtgcccctgtgcccgtgggggctgcagcacttcctgccaatcca
gagaaaccacgggacccaaggctggccagtctggccagtagaactgagacaaaagggaag
gagcagcaggccttgaaagatggcagctggtcagcccagagcaatccaggatcaacatca
cagcaaggccttaatgcaccctcagctgccagggatcagatttccagaacagaaaatctc
aggaaggcccagcaggcaacaggacagtgcaatgtgctttccacatctccttgcacagct
cagcatgagggtgacaggagaggggctgtgcccaaaaacggttccaaagccctcagtgaa
ggaggtcacagtaacagcagcgagtgcaacaaggactgtcggggtttaaccaggagacca
tcagaggaactgccagaggacacagaatcaagcaatgccaagcgaagaaagatatttcat
tga
DBGET
integrated database retrieval system
