Emergencia timonensis: CE91St48_19900
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Entry
CE91St48_19900 CDS
T08071
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
etm
Emergencia timonensis
Pathway
etm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE91St48_19900 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etm03019
]
CE91St48_19900 (rnj)
Messenger RNA biogenesis [BR:
etm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CE91St48_19900 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BDF08549
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Position
complement(2103813..2105606)
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AA seq
597 aa
AA seq
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MRDFNSKKPPVKKAAAVKKPPAKELQTKQKAERKPVPKKSSARQAKKADNLKVIPIGGLN
EIGKNLTVLEYKDQMILIDCGMTFPEDEMYGIDVVIPDFSYLVKNAHKILGVVITHGHED
HIGAVPYLLKQINVPIYGTRLPLGLIENKLKEHGLKAKLNTIKAGDKFKLGDFKIEAIRT
THSIADAICLYIQTPVASLFHTGDFKIDYTPIDGEPIDLAKFAEIGRRGVDLMMADSTNA
LRPGYTASEKVVGKTLDGIFREAKNRILIATFSSNVHRVQKIIELAVKHGRKVAVSGRSM
ENVVALAVELGYLHIPAGAYVELNKTRNIPDNELVIITTGSQGEPMSALSRMANNEHRNV
KLKKGDMVILSSTPVPGNEKTVSSVVNKLYEKEVEVIYNDIADIHVSGHACQEELKLIHT
LIKPKFFMPVHGEYRHLVQHSVIAESIGMRKDRIFILSNGDQLTVDKRNAVKFHNVVNAE
DVLVDGLGVGDVGNIVLRDRKLLSESGLIIVVSAIDRASGEIISGPDIVSRGFVYVRENE
DLINDAKKIAHQALEDSLEAGNRDWSGIKNSVREELRKFIFRKTKRSPIILPIFLDV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagagattttaatagtaaaaaaccgcctgttaaaaaggccgcagcagttaagaaacct
cctgctaaggagcttcagacaaaacaaaaagcagagagaaaaccggtgccaaagaagagc
tctgctcggcaggccaagaaagcagataaccttaaagtgataccaattggaggacttaac
gaaattggtaagaatctgacggttctggaatacaaggatcaaatgatcttaattgactgt
ggcatgacgttcccagaagatgaaatgtacggaattgacgtcgtcattccagatttcagc
tatctggtgaaaaatgctcacaaaattttaggtgtagtcattacccacgggcatgaagac
cacatcggagcagtgccatatctgttaaaacagattaacgttccgatttacggtactaga
cttcctttgggattgatagaaaataaattgaaagaacacggcttaaaagcaaagctgaac
acaatcaaagctggcgataagtttaagttgggagattttaagatcgaagccatcagaacg
acccactctatcgccgacgccatctgtttgtatattcagactccggttgcttcgttattc
catacaggcgactttaaaattgactatacgcctattgatggagaaccgatcgatctggct
aaattcgcagaaatcggcagacgaggcgtggatctgatgatggcagacagcaccaatgct
ctgagaccaggttacactgcctcagaaaaagtggtcggaaagactctggatggtatattc
agagaagcaaagaacagaattctgatcgctaccttctcttctaacgtgcacagagtacag
aagattatagagcttgctgtaaagcacggacgaaaagtagctgtttcaggccgcagtatg
gaaaatgtcgtagctctggctgtggaattaggatatttgcacattccagcaggggcatac
gtagaactaaataagacgagaaatataccggacaacgaactagtcattataacgacgggc
agtcagggtgaaccgatgtcagcgttatcaagaatggcgaacaatgaacatcgtaatgtc
aaactgaaaaaaggcgacatggttattctttcgtctacgcctgttcccggtaatgaaaag
acggtgtccagcgtagtgaataagttatatgagaaggaagtggaagtcatctataatgac
atcgctgatattcacgtttcgggccacgcttgccaggaagaactgaaattgatccacact
ttgatcaagccaaaattcttcatgccggttcacggcgaatatagacatctggtacagcat
tctgtcatcgcagaaagcatcggcatgagaaaagatagaatctttatcttatctaacggc
gatcagttgacagtggacaagcgaaatgcggttaaattccacaatgtagtcaatgcagaa
gatgttttagtcgatggactcggtgtcggagacgtaggaaatattgttcttcgcgataga
aagctgctctctgaatcaggattaatcattgtcgtatcagcaattgacagggcttctgga
gaaatcatttccggtcctgacatcgtatccagagggtttgtctacgtgagagaaaacgag
gatctgatcaatgatgcgaagaagattgcacatcaggcattggaagacagtttggaagcg
ggcaacagagattggagcggtatcaaaaacagcgtcagagaagaactgcggaaattcatc
tttagaaagaccaagagaagcccgataatactgccgatatttttagacgtataa
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