Erwinia tracheiphila: LU633_01410
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Entry
LU633_01410 CDS
T07827
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
etp
Erwinia tracheiphila
Pathway
etp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU633_01410 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etp03021
]
LU633_01410 (rpoB)
03400 DNA repair and recombination proteins [BR:
etp03400
]
LU633_01410 (rpoB)
Enzymes [BR:
etp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU633_01410 (rpoB)
Transcription machinery [BR:
etp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU633_01410 (rpoB)
DNA repair and recombination proteins [BR:
etp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU633_01410 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
UIA96750
LinkDB
All DBs
Position
285249..289277
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVYEIRDNKLQME
LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDGVEHIEVPVEYIAGKVVAKD
YIDENTGELIVAANMDLSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIDVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIFALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPVERD
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIHYLLVSGGVEAEKLDNLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINTMLKQQEEVAK
LREFIQRAYDLGTDVRQKVDLSTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggaaaacgtccacaa
gttctggacattccatatctgctttctatccagcttgactcgttccagaaattcatcgag
caagatccggaaggtcaatacggtctggaagcggcattccgttccgtgtttccaattcaa
agctacagcggcaattctgagctgcaatatgtcagctaccgtttaggcgaacctgtattt
gatgtgaaagagtgtcagattcgtggcgtcacgttctctgctcctctgcgtgtaaaattg
cgcctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggtgaaattccacttatgacggacaacggtactttcgtcatcaacggt
acagaacgcgttatcgtttcccagctgcatcgtagccccggtgttttctttgatagcgat
aagggtaaaacccactcatcgggtaaagtgctgtataacgcacgcattatcccctaccgt
ggttcctggctggactttgagttcgatccaaaagataacctgtttgtccgtattgaccgt
cgccgcaagctgcctgcgaccatcatcctgcgcgcgctgaactacaccactgagcagatc
cttgacctgttctttgacaaaatcgtgtatgaaattcgcgacaacaagctgcagatggag
ctggtgcctgagcgcctgcgtggtgagaccgcctcttttgatatcgagtccaatggaacg
gtatacgtagaaaaaggccgtcgcattactgcacgtcacattcgtcagctggaaaaagat
ggtgttgagcacatcgaagtaccggttgaatacatcgcgggtaaagtcgtcgctaaagac
tacatcgacgaaaataccggcgagctgatcgttgccgctaacatggatctgtcgctggac
ctgctggcgaaactcagccagtccggccacaagcgtattgaaacgctgttcaccaacgat
ctggaccacggtccgtatatttctgaaaccgttcgcgtcgatccaaccagtgaccgcctg
agcgcgctggttgagatctaccgcatgatgcgccctggcgaaccgccaacgcgtgaagcg
gctgaaaacctgttcgaaaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggtcgtatgaagttcaaccgttccctgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagacgacatcattgatgtgatgaaaaagctcatcggtatccgtaacggcattggc
gaagtggatgatattgaccacctcggcaaccgtcgtatccgttccgtcggcgagatggct
gaaaaccagttccgcgtaggtctggttcgtgttgagcgcgcggtgaaagagcgtctgtcc
ctgggcgacctggacactctgatgcctcaggatatgatcaacgccaagccaatctctgcc
gcagtgaaagagttctttggttccagccagctgtcacagtttatggaccagaacaaccca
ctgtctgagattacgcacaagcgtcgtatctttgcacttggtccgggcggtctgacgcgt
gagcgtgcaggctttgaagttcgagacgttcacccgactcactacggtcgcgtgtgccca
atcgaaacccctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
accaacgagtacggtttcctggaaaccccataccgccgcgttcgcgacggcgtggtgacc
gacgaaattcattacctctctgccattgaagagggtaactacgttatcgctcaggcgaac
accaacctcgacgacgaaggtcacttcgtggacgatctggtgacctgccgcagcaaaggc
gaatcaagtctgtttagccgagatcaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggggcaagcctgatcccgttcctggaacacgatgacgccaaccgcgcattg
atgggtgcaaacatgcaacgtcaggcggttccaacgctgcgtgctgataagccgctggtt
ggtaccggtatggaacgcgcggtagcggttgactccggtgtgaccgccgtcgcgaaacgt
ggtggtaccattcagtacgttgatgcatcccgtatcgttatcaaagttaacgaagacgaa
atgtacccgggcgaagccggtatcgacatctataacctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagatgccatgtgtcaacctgggggagccagttgaacgtgat
gatgtgctggctgatggtccttctacggatctcggcgaactggcactgggtcagaacatg
cgcgtcgcgttcatgccgtggaacggctacaacttcgaagactccattctcgtctccgag
cgagtggtacaggaagatcgtttcaccactatccacatccaggaactggcgtgtgtgtct
cgtgacaccaagttggggccggaagagatcactgctgacatcccgaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtgtatatcggcgcggaagtgaccggtggc
gacattctggtgggtaaggtaacgccgaaaggtgaaacccagctgaccccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgcgtg
ccaaatggcgtgtctggtaccgttattgatgtgcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgcgctggaaatcgaagagatgcagctcaagcaggcgaaaaaagacctg
tctgaagaattgcaaatcctcgaagcgggcctgttcagccgtattcactacctgctggtt
tccggcggcgtggaagcggaaaaactggataatctgccacgcgagcgctggctggaactc
ggtctgaccgacgaagagaagcaaaatcagctggagcagctggcagagcagtacgacgag
ctgaagcatgagtttgagaaaaaacttgatgcgaaacgccgcaaaatcacccagggcgat
gacctggcaccgggcgtgctgaaaatcgtaaaagtgtatctggccgttaaacgtcagatc
cagccgggtgacaaaatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagacatgccttatgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccttcacgtatgaacattggtcagattctggaaacccacctgggtatggca
gcgaaaggcattggcgagaaaatcaacacgatgcttaagcagcaggaagaagtggccaaa
ctgcgtgagttcatccagcgcgcctacgatctgggcactgacgtgcgtcagaaagttgac
ctgtctactttctctgatgaagaagtcctgcgtctggcagaaaacctgaagaaagggatg
ccgattgccacgccagtgttcgacggcgcgaaagaaagcgaaatcaaagagctgctgcag
ctcggcggcctgccttcttccggtcagatcactctgttcgatggtcgcaccggcgaacag
ttcgagcgtcaggttaccgtgggctacatgtacatgctgaaactcaaccacttagtggat
gataaaatgcatgcacgttctaccggttcctacagcctggtgactcagcagccgctgggt
ggtaaggcgcagttcggtggacagcgttttggtgagatggaagtgtgggcgctggaagca
tacggtgccgcttataccctgcaggaaatgctgaccgtgaagtctgatgacgtgaacggc
cgtaccaagatgtataaaaacatcgttgacggcaaccatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagagatccgctcgctgggtattaacatcgagctggaa
gacgagtaa
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