Erwinia tracheiphila: LU633_03945
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Entry
LU633_03945 CDS
T07827
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
etp
Erwinia tracheiphila
Pathway
etp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU633_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etp03019
]
LU633_03945
03009 Ribosome biogenesis [BR:
etp03009
]
LU633_03945
Enzymes [BR:
etp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LU633_03945
Messenger RNA biogenesis [BR:
etp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LU633_03945
Ribosome biogenesis [BR:
etp03009
]
Prokaryotic type
rRNA helicases
LU633_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIA97140
LinkDB
All DBs
Position
761721..763580
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AA seq
619 aa
AA seq
DB search
MTDIQTTFSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDAGVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLSVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAEKVQQQLESSDLGQYRALLSKMHPEEELDIETL
AAALLKMAQGERPLIVPADPAPRPRREFKERDDRGPRENRDGDRPRRERRDVGDMEVYRI
DVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDILQHFTRTRIL
NKPMNMQLIGDAQPHSNDRGGERRGGPGAGRGGFGGGRSEGGRRFSNDRGGERRGGGFSR
EGGSRRRENGGAPARRRDI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaactactttttctgacctcggcctgaatgccgatatcctcgaatct
ctgaacggcatgggctatgttaaaccatcccctatccaggctgagtgtatccctcatctt
ctggctggccgcgatgtattaggcatggcacagactggtagcggcaaaacagctgctttc
tctctgccacttttaaacaatattgatgcaggtgttaaagcaccgcagattctggtactt
gcacctactcgtgagctggcggtccaggttgctgaagcagtaacagaattctctaaacat
atgcgtggactcagcgtggttgccctttacggtggccagcgttatgacgtccagctgcgc
gcacttcgtcagggtcctcaggttgtcgtcggtacgcctggtcgtctgctggaccacctt
aagcgtggtacgttagacctgtctaatctgcgtggtctggttctggacgaagccgatgaa
atgctacgtatgggtttcattgaagatgttgaaaccatcatggcgcagatcccggaaggc
catcaaacagcgctgttctcggcaaccatgccggaagctatccgtcgtattacaaaacgc
tttatgaaagatcctcaggaagtgcgtattcagtcaagtatcactacacgtcctgatatc
agccagagttactggacagcatatggccgtaagaccgatgcactggtgcgcttcctggag
gctgaagattttgatgccgctattatctttgtgcgtaccaagaatgcgactctggaagta
gctgaagcacttgagcgtagcggctataacagtgcagcacttaacggtgacatgaatcag
gcactgcgtgagcaaacgctggaacgtttgaaagacggacgcctggatatcctgattgcc
actgatgtcgctgcccgtggactggacgtggagcgtatcagcctggtcgtcaactttgat
attcctatggatgcagagtcttacgttcaccgcattggtcgtactggccgtgccggtcgt
gccggtcgtgctttactgtttgttgagaaccgtgagcgtcgtttgctgcgtaatattgaa
cgcaccatgaaattgactattcccgaagttgaactgccaaatgcggagctgttaggtcag
cgtcgcttggctaagtttgccgaaaaggtccagcagcaactggaaagcagcgatctggga
cagtaccgtgctttgttaagtaaaatgcatccagaagaagagctggatattgaaacgctg
gcagcggcattgctgaaaatggctcagggtgaacgcccactgatcgtgcctgccgatccg
gctccacgcccgcgtcgtgaattcaaagagcgtgacgatcgtggtccgcgtgaaaaccgt
gatggcgatcgcccacgccgtgagcgtcgtgacgttggtgatatggaagtttaccgtatt
gacgtgggtcgcgatgacggtgttgaagttcgccatatcgttggtgctatcgccaatgaa
ggcgatatcagcagccgttacattggtaacatcaagctgtttggaacccactctactatt
gaactgccaaaaggtatgccaggggatattctgcaacactttacccgtacgcgtattctg
aacaaacctatgaatatgcagctgattggtgatgcacagcctcatagcaacgatcgtggt
ggcgagcgccgtggtggtcctggtgcaggtcgtggtggttttggcggcggtcgttctgaa
ggtggtcgtcgtttcagcaacgatcgcggtggtgagcgtcgtggcggtggattcagccgt
gaaggtggcagccgtcgtcgtgagaatggtggcgcgcccgctcgccgtcgggacatctaa
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