Erwinia tracheiphila: LU633_04925
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Entry
LU633_04925 CDS
T07827
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
etp
Erwinia tracheiphila
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etp03019
]
LU633_04925 (hrpB)
Enzymes [BR:
etp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LU633_04925 (hrpB)
Messenger RNA biogenesis [BR:
etp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LU633_04925 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
AAA_22
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UIA98538
LinkDB
All DBs
Position
964987..967428
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AA seq
813 aa
AA seq
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MGSLPVSAIFPALLSALRRSPQVLLIAPTGAGKSTWLPLQLLQQGDFSGKILLLEPRRLA
ARNVAQRLAEQLGEQPGETVGYRMRSENCIGPATRLEVITEGILTRMLQQDPMLEGVSLV
MLDEFHERSLQADLALALLLDVQQGLRDDLTLLLMSATLDDRRLTTMLPDAPVICAEGRS
FPVERRYASLPATARFELAVAQQVARLLHEERGSLLLFLPGVAEIQRVQIALGELIAADT
ELCPLYGALSLAEQRKAIAPAPAGCRKVVLATNIAETSLTIEGIRLVVDSTLERVALFDP
RSGVTRLQTQRVSQASMIQRAGRAGRTEPGLCLHLMAKEQAERAASHSDAEILNSDLAPL
WLDLLQWGCPDVTQLCWLDRPPARNLDCAQRLLMALGATDACGRLTGKGRRMAALGSEPR
FSAMLIDACDDKDRASTAALLVAMLEEPAHGSIDLCDGVHRPQNNWQQRAVQLLRRLKIT
GGKADSALIAPLLAGSFPDRIARRRGAEGRYQLANGSGAKLECDAALTRYEWLVAPGLLQ
GSAQPDARILQAVPLDIETLIRQQPERVTQQTEVEWDEQRGTLRAWRRQQIGELVLAAQP
MSKPDEDELHPAMLRWIRLKGLSVLNWTPQAEQLRLRLVCAAQWLPEENWPAASKADLLV
SLESWLLPAMHGVRDAKGLQQIDVASALLQLLTWSCRQQLDTLLPTHYTVPTGSRLPIRY
HQEKPPVLAVRLQEMFGEAQNPCVAAGRVALVLELLSPAQRPLQITRDLSGFWQGAYSEV
QKEMKGRYPKHHWPDNPASALPTSRTKKFSASS
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
gtgggttcattaccggtcagtgcgattttccccgcgttattatccgccctgcggcgttcg
ccccaggtgctgcttattgcccctaccggcgcgggaaaatccacctggctgccgttacaa
ctgttgcagcagggcgacttcagcggaaaaatcctgctactggaaccccggcggctggcg
gcccgtaacgtggcgcagcggctggcggaacagctgggtgagcagccgggcgaaaccgtg
ggctatcgcatgcggtccgaaaactgcatcggtcccgccacgcggctggaagtgattacc
gaaggtattcttacccggatgttacagcaggacccgatgctggaaggcgtttcgctggtg
atgctcgatgagttccatgagcgcagcctgcaggcggacctcgcgctggcgctgctgctg
gatgtgcagcaaggactgcgtgacgacctgacccttctgctgatgtcggccaccctggac
gatcgacgcctgacgacaatgctgcccgatgccccggtgatttgcgctgaaggacgctcg
tttccggttgaacggcgctatgcctctttgcctgccacggcacggttcgaactggccgtg
gcgcagcaggtggcgcggttactgcatgaagaacgcggctcgctgctgctttttctgccg
ggcgtggcggaaattcagcgggtacagattgcgttaggtgagctgatagcggcggatacc
gaactctgcccgttgtacggtgcgctctcgcttgcagagcagcgaaaagcgatagcgccc
gcgccagccgggtgccgtaaggtggtgctggcgaccaatattgccgaaaccagcctgact
attgaggggatccgtctggtggtggacagcacactggagcgggttgccctgtttgatccg
cgcagcggcgtgacgcgcttacagactcagcgcgtcagtcaggcgtcgatgatccagcgt
gccggacgggcagggcgtactgaacccggcctttgtctacatctgatggcgaaagagcag
gcggaacgtgcggccagtcattctgatgcggaaatactcaacagcgatctcgcgccgttg
tggctggatctgttgcagtggggctgccccgacgtcacgcaattatgctggttggatcgg
ccgcccgcgcgcaatcttgattgcgcacaacggttgttgatggccctgggtgcaactgat
gcctgcggcagactgaccggcaaagggcggcgcatggcggcgctcggcagcgaaccgcga
ttttccgccatgctgattgacgcatgtgatgataaagatcgcgccagcaccgccgcgctg
ctggtggcgatgctggaagaacccgcgcacggcagcatcgatttgtgcgacggcgtacat
cgtccacagaataactggcaacagcgtgccgtgcagctgttgcgccgcctgaaaataacc
ggaggcaaggcagacagcgcgctgattgcaccgctgctggcgggctcttttccagaccgt
atcgcccgccgccggggggcggaaggccgctatcagctggccaatggcagcggggcaaag
ctcgaatgcgacgcggcgctgacccgctatgaatggctggttgcccccggtttactgcag
ggcagcgcccagccggacgcgcgtatattgcaggcggtgccgctggatattgaaacactt
atccgccagcagccggaacgggtaacgcagcaaactgaagtggaatgggatgaacagcgc
ggcacgctacgcgcgtggcgccgtcagcaaatcggtgaactggtgctggccgcccagccg
atgagcaagcctgatgaagatgagctgcacccggcgatgctgcgctggatccgcctgaaa
ggattatcggtactgaactggacgccgcaggcggagcaactgcgcctgcgactggtgtgc
gccgcacaatggctaccggaggaaaactggcccgctgccagtaaggcagatttacttgtc
tcactggaaagctggctgctgcctgccatgcatggtgtacgcgatgccaaaggattacag
cagattgatgtggccagcgctttattacaattgctcacatggtcctgtcgtcagcaactg
gatactctgctgccaactcactacactgtgcccaccggaagccggcttccgatccgttat
catcaggagaagccgcccgtactggcggtacgattacaggaaatgtttggggaagcgcag
aatccgtgcgtggccgcagggcgggttgccctggtgctggaactgctctccccggcgcag
cggccgttgcagattacccgcgacctgtcggggttctggcagggtgcgtactctgaagtg
caaaaagagatgaaagggcgctatccgaaacatcactggccggacaatccggccagtgcg
ctgccaacgagccgtaccaagaagttttcggcatcttcatga
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