Erwinia tracheiphila: LU633_12435
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Entry
LU633_12435 CDS
T07827
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
etp
Erwinia tracheiphila
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etp03019
]
LU633_12435 (hrpA)
Enzymes [BR:
etp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LU633_12435 (hrpA)
Messenger RNA biogenesis [BR:
etp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LU633_12435 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
NACHT
PhoH
TsaE
ResIII
AAA_25
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UIA98439
LinkDB
All DBs
Position
2347789..2351685
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AA seq
1298 aa
AA seq
DB search
MSDTPHKPLTALFQRVETLMLRDRQRLLKRLHGAKKVKNPHAQEAIASELNREIDLAEQR
VNQRRAAIPGIRYPDNLPVSQKKQEIADAIQAHQVVIVAGETGSGKTTQLPKICMELGRG
ITGLIGHTQPRRLAARTVADRIAEELETTPGGCVGYKVRFNDRVSDITQVKLMTDGILLA
EIQQDRLLLQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FHNAPVIEVSGRTYPVEVRYRPVVEEADDSERDQLQAIFDAVDELGKEGHGDILIFMSGE
REIRDTADALNRRELPHTDVLPLYARLSNAEQNWVFQPHTGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDKRNIQDGVRLLEELGAITYHDD
GRYRLTSSGRTLSQLPVDPRLAKMVLAAKDYACTREVMIIAAALSIQDPRERPADRQQAS
DEKHRRFVDKSSDFSLFVNLWDYLQEQQKALSSSQFRRMCKMDYLNYLRVREWQDIYTQL
RQIVREQGIPLNSEAADFIGLHTALLTGLLSHIGQKDAEKQEFTGARNARFALFPGSALF
KKPPKWTMVAELVETSRLWGRIAARIEPEWIEPIAQHLIKRSYSEPHWEKSQGTVMATEK
VTLYGLPIVAARKVNYSRIDPVLSRELFIRHALVEGEWQTRHAFFRDNFRLREEVEELEH
KSRRRDILVDDEMLFNFYDGRIPSQTISAGHFDTWWEQARREQPDLLNFAKEMLIKKGAE
DVSKLDYPNFWQQGNVKLRLSYQFEPGTDADGVTVHIPLPLLNQIEGEGFEWQIPGVRRE
LVISLIKSLPKPLRRNFVPAPNYAEAFLARVTPFERPLLDSLEREFRRMSGVTLERENWQ
WEQVPDHLKMTFRVVDEQNRKLGEGRDLAGLRLQLKGKVQETLSQVVDDGLVQRGLSTWS
FGDLPDHFEQKRGNYHVKAWPALVDEKDSVAIRLFDSQHEQQKAMWLGQRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCITSAIDKLIEEQGGPGWQAQAFTALHEKV
RAELNDTVVDIASKVEQVLTTVFNINKRLKGRVDMSMALALSDIKTQMGRLVYRGFVTQS
GWRRLPDTLRYLQAIERRLDKLPVDPHSDRARMIKVQSLEQIWSSWLTKLPPTRRDDAEV
QDIRWMIEELRVSYFAQQLGTPYPVSEKRIQQAMEALL
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatactccccataaaccattgacggcgctatttcagcgcgttgaaacgttgatg
ctgcgtgatcgccaacgtttgctgaagcgtttgcacggtgcaaaaaaagtaaaaaatcca
catgctcaggaagcaatagcgtctgaattaaatcgcgagattgacctggctgaacagcgt
gtgaatcaacgccgtgcggccataccaggcatcagatatcctgataatttgcctgtcagc
cagaaaaagcaggagatagccgacgcaattcaggctcatcaggttgttattgtggctggc
gaaaccggctccggcaaaaccacacagctgccaaaaatttgcatggagttgggtaggggg
ataaccggactaattggtcacacgcagccacgaaggcttgccgcgcgaaccgtcgccgat
cgcattgctgaagaactggagacaacgccgggcggctgtgttggctacaaagtccgcttc
aacgatcgggttagtgacatcactcaggttaaactcatgaccgatggtattctgctggca
gagattcagcaggaccgactgcttttgcaatatgacacaatcattattgatgaagcccat
gaacgcagcctgaatatcgattttctgctgggttatctgcgagagctgttgccgcggcga
cccgacctgaaagtgattatcacttcagcaaccattgatccccagcgtttttccagacac
ttccacaatgcgcccgttattgaggtttccggcagaacctatccggttgaagtgcgctat
cgccccgtggttgaagaggcggatgacagcgagcgggatcagctgcaagcgattttcgat
gccgtggatgaactgggcaaagaagggcatggagatattcttattttcatgagtggtgaa
cgtgaaatacgggataccgcagatgccctgaatcgtcgtgaactgccgcacaccgacgtt
ttgccactgtatgcgcgtttatcaaatgcggagcaaaactgggtatttcagccgcacact
ggcaggcgcatcgtgttggctactaacgtggccgaaacctcgctcaccgtaccgggcatt
aaatacgtgatcgatcctggcaccgcgcgcatcagtcgttacagtttccgcaccaaggta
cagcgcctgccgattgagccgatctctcaggcatcagccaaccagcgtaaaggacgctgt
ggcagggtttccgaaggtatttgtatacgcctttattcagaagatgatttcctgagccgc
cccgcctttactgacccggaaatcctgcgcactaatctggcctcagttatcctgcaaatg
acggcgctggggctcggcgatatcagcgcgtttccttttgtggaagcgccggataagcgt
aatattcaggacggtgtacggttgctcgaagagctgggtgcgattacatatcatgacgac
ggtcgctatcggctgacctcttccggtcgaaccctgtcgcagctgccggtggacccgcgt
ctggcaaagatggtgttggcagcaaaagattatgcttgtacgcgtgaagtaatgattatt
gctgctgccctttcgattcaggacccgcgcgagcgccctgcagacagacagcaggcatcg
gatgaaaaacatcggcgatttgttgataaatcgtctgatttttcgttattcgttaatctg
tgggattatctgcaagaacagcaaaaagccctttcttccagccagtttcgccgcatgtgt
aaaatggattatctcaattacttgcgcgtacgtgaatggcaggatatctacacacagctg
cgtcagatcgtgcgcgagcagggtatcccgcttaacagcgaagccgctgacttcataggg
ctacataccgcgttgctgacgggcttgctctcgcatattggtcaaaaggatgccgagaag
caggaattcaccggggcacggaacgcgcgctttgccctttttccaggctccgcgctattt
aaaaaaccgccaaaatggaccatggtggcagaactggtcgaaaccagccgactctggggg
cgtattgctgcgcgcattgaacctgaatggattgagccgatagcccagcatctcatcaaa
cgcagctacagcgaaccacactgggaaaaaagccaggggacggtaatggccactgaaaaa
gtcaccctgtatgggttacctattgtggcagcgcgtaaagttaattatagccgtattgac
ccggtattatcgcgcgaactgtttatccgccacgcactggttgaaggggaatggcagacg
cggcatgcattttttcgtgacaattttcgcctgcgtgaagaagttgaagagcttgagcat
aaatcgcgtcgccgcgacattctggtagacgatgagatgctattcaatttctacgatggg
cgtattccttctcagacgatctctgcagggcattttgacacctggtgggagcaggcccga
cgcgaacagccggatctgctcaattttgcgaaagagatgctgataaaaaagggggcggaa
gacgtcagcaaactcgattacccgaatttctggcagcagggcaatgtgaaattgcgtctg
agttaccagtttgaaccgggaacggatgccgatggcgtgacggtacacattccattaccg
ctgctcaatcaaattgaaggcgagggctttgagtggcaaattccaggcgtcagacgagag
ctggttatttcgctgataaaatcgttaccaaagcccctgcggcgtaattttgttccggca
ccgaactatgcggaagcgtttctggctcgcgtcacaccgtttgaacgtccgctgcttgat
tccctcgaacgtgaatttcgccggatgagcggggtgacgcttgaacgggagaactggcag
tgggagcaggtgcccgatcatctcaaaatgacgtttcgtgttgtggatgagcaaaatcgc
aagctgggtgaaggccgtgaccttgccgggttgagattacaattaaagggaaaagtgcag
gaaaccctgtctcaggttgtcgatgatggattagtgcagcgtggccttagtacatggagc
tttggcgatttgcccgatcactttgagcagaagcgaggaaactatcatgttaaagcgtgg
cccgcactggttgatgaaaaagacagcgtggcgatccgcctttttgactcacagcatgag
cagcaaaaagccatgtggctgggacagcgaagattgctgttgttgaatattccctcaccg
atcaaatacctgcacgaaaaacttcccaataaagccaaactgggcctttatttcaatccc
tatggaaaagtgcttgatttaattgatgattgcatcaccagcgcgatcgacaaactgatt
gaggaacagggtgggccgggttggcaggcacaggcgttcactgcactgcatgaaaaagtg
cgcgcagagcttaatgacactgtagtggatatagccagtaaggttgagcaggtattgacc
accgtattcaatattaataaacgtctgaaagggcgcgtggatatgtccatggcgctggca
ttgtcggatataaaaacacaaatgggcaggctggtttatcgcggatttgttacgcaaagt
ggctggcggcgtctgcctgatacattgcgttacctgcaggcaattgagcgcaggttggat
aagttaccggtcgatcctcacagcgatcgtgcacgaatgataaaagtacaaagcctggaa
cagatatggagtagttggttaactaaactgccgcctacgcgcagggacgatgcagaagta
caggatatacgctggatgattgaggaattgcgggtaagttatttcgcccagcagctgggg
acaccttatccggtatctgaaaaacgtattcagcaggcaatggaggcgttgctttaa
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