Erwinia tracheiphila: LU633_12835
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Entry
LU633_12835 CDS
T07827
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
etp
Erwinia tracheiphila
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
etp03016
]
LU633_12835
Enzymes [BR:
etp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LU633_12835
Transfer RNA biogenesis [BR:
etp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LU633_12835
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
UIA98491
LinkDB
All DBs
Position
complement(2427465..2429396)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKEKLHSQTPRVEGVVKGTEKGFGFLEVDPQKSYFIPPPFMKKVMHGDRV
VAVLQTDKDREVADPETLVEPFLSRFVGRIQKKDDRLSIVPDHPLLKDAIQCRADRNLKH
DFQNGDWAVAEMRRHPLQGDHTFYAELTAFVTKGDDHLAPWWVTLSRHNLEREAPEGVAV
EMIDENLTREDLTALEFVTIDSASTEDMDDALYVEETADGELSLTIAIADPTAYVAAGSP
LDDIAAQRAFTNYLPGFNIPMLPRQLSDDVCSLRPHQRRPVMACRVTVADDGSMGEPHFF
AAWIESKAKLVYDNVSDWLENSGEWQPETEFIARQIELLHRLCLSRVAWRQTHALVFKDR
PDFRFLLGEKGEVLDIIAEHRRIANRIVEEAMIAANICAASVLRDQLGFGIYNIHPGFDA
ANAELAAAVLANHGVQADPLAIATLDGFRVLRRELDAQPTQFLDSRIRRFQSFAEIGTEP
RPHFGLGLEAYATWTSPIRKYGDMINHRLLKSIVRGEKAERPQDDITIRMSERRRLNRMA
ERDVGDWLYSRFLQSAAGTDQRFSAEIIDISRGGMRVRLTDNGAVAFVPAPFIHAVRDEL
VCSQENGTAQIKGEVAYRVTDIIDVTVAEVRIETRSIVARPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgcttgcgcagctcaaagagaaactccactcccaaacgccg
cgtgttgaaggtgtggtaaagggcactgaaaaaggctttggctttctggaagtcgacccg
caaaaaagctacttcatcccccctccgtttatgaaaaaagtgatgcatggcgatcgtgtg
gttgcggtgctgcaaaccgataaagatcgtgaagttgccgatccggagacactggttgag
ccttttctaagccgctttgtagggcgtatacagaaaaaagatgatcgcctgtcgattgtt
cccgatcatccgctactgaaagatgcaattcagtgccgtgctgatcgtaatcttaaacat
gattttcagaatggggactgggccgtcgctgaaatgcgtcgtcatcctctgcaaggcgat
catactttttacgccgagctgactgcatttgtcaccaaaggtgatgaccatctggcaccc
tggtgggtgacgctgtcacgtcacaatctggagcgggaagccccggaaggcgtcgcggtt
gaaatgattgatgaaaatctgacgcgtgaagacctgaccgcgctggaatttgtcacgatt
gacagtgccagcaccgaagatatggatgacgcactttacgtggaggaaaccgctgacggt
gagttgtcgctgaccatcgctatagccgatccgaccgcttatgttgcggcgggtagccca
ctggacgatatcgccgcacagcgtgctttcaccaactacctgcccggttttaatattcca
atgttgccgcgtcagctctctgacgatgtttgctccctgcgtcctcatcaacgcagaccg
gtaatggcctgccgcgtcacggtagccgacgatggctcaatgggcgaacctcatttcttt
gccgcctggattgaatcaaaagccaaactggtttatgacaacgtttctgactggctggag
aacagcggcgagtggcagccagaaaccgagttcatcgccagacagatagaactcctgcat
cgcctctgcctcagccgcgttgcatggcgtcagactcacgcgctggtatttaaagatcgc
ccggacttccgcttcctgctgggtgaaaaaggtgaagtactggatatcattgctgaacat
cgacgtattgctaatcgtatcgttgaagaagcgatgatcgccgccaacatctgcgcggca
tccgtattgcgtgaccaacttggcttcgggatttacaacattcatcccggctttgatgcc
gccaatgccgaactggccgccgccgtgctggccaatcacggcgttcaggccgatccgctg
gcgattgccacgctggacggttttcgggtattacgccgcgaactggacgcacagcccacg
cagttccttgacagccgcatccgtcgctttcagtcgtttgcagaaattggcaccgagcca
aggccacactttggccttgggctggaggcgtatgcaacctggacatcaccgattcgcaag
tatggagatatgatcaaccatcgcctgctgaaatcgattgttcggggtgaaaaagcagaa
cgtccacaggatgacatcaccatcagaatgagcgagcgtcgccgtctcaaccgtatggca
gagcgcgatgtgggtgactggctttattcccgttttctgcaaagtgcggcggggaccgat
caacgtttcagcgcagaaattattgatatttcccgtggtggaatgcgtgtacgtctgact
gataacggcgctgtggcctttgtccctgccccgttcattcatgcggtacgtgatgagctg
gtatgtagtcaggaaaacggcaccgcgcagattaaaggtgaagtggcttaccgcgtgaca
gacatcattgatgtcaccgttgctgaagtgagaattgaaacccgcagtattgtggcgcgt
cccgctgcataa
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