Edwardsiella piscicida EIB202: ETAE_2327
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Entry
ETAE_2327 CDS
T01121
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
etr
Edwardsiella piscicida EIB202
Pathway
etr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAE_2327 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etr03019
]
ETAE_2327 (rhlE)
Enzymes [BR:
etr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAE_2327 (rhlE)
Messenger RNA biogenesis [BR:
etr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAE_2327 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACY85162
UniProt:
A0AAU8P4J3
LinkDB
All DBs
Position
complement(2443732..2445054)
Genome browser
AA seq
440 aa
AA seq
DB search
MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL
QLLHQNPKNGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLI
GTRDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDI
ERLLKRPIPRMAIEGYEPDPTIKAEPIQNGRQGGRQNSGRTERPGQGRRAEGPRNAAPRQ
GQNRRPRRPAEQGKGRTEGR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggcctgtgtgccgaactgttacgcgctgtggaagagcagggc
tatcgtgatccgaccccaatccagcagcaggccattcccctggtgctgcagcgtcgcgat
ctgatggccagtgcccagaccggcaccggtaagaccgccggctttacgctgccgctgctg
cagctgctgcaccagaatcccaaaaatggtaagggacgccgcccggtgcgggcgctgatc
ctgacgccgacccgcgagctggcggcgcagatcggtgaaaacgtacgcgagtacagccgt
catctgccgctgcggtcgctggtggtgttcggcggcgtgagcattaacccgcagatgatg
aagctgcgcggcggcgtggatgtgctggtggcgacgccggggcgtctgctggatctggcc
catcagaatgcggtggatctgtctcaggtcgagatcctggtgctggatgaagccgatcgg
atgctggatatgggctttattcacgacattcgccgcgtgctggctcgcctgccggccaag
cggcagaacctgctgttttccgccaccttctccgatgagatcaaggcgctggcggcgtcg
ctgctgcataacccggccgaggtggaagtggcgcgccgcaataccgcgtcagagctggtg
acgcagcacgtgcatctggtggataagaagcgtaagcgcgagctgctctctttcctgatc
ggcacccgggactggcgtcaggtgctggttttcacccgtaccaagtacggcgctaaccac
ctggcggagcagctgaataaagacggcatcagcgcggcggcgatccacggcaacaaaagc
cagggcgcacgtacccgcgcgctggcggactttaagagcggtgatattcgggtgctggtg
gcgacggatatcgccgcgcgcggcctggatatcgatcagctgccttacgtggtgaactat
gagctgcccaacgtgccggaggactacgtgcaccgtatcggccgcaccgggcgggcccag
gcgaccggtgaggcgctgtcgctggtctgcgtggatgagcataagctgctgcgcgatatc
gaacgcctgctgaagcgcccgattccgcgcatggccattgagggctatgagccggatccg
accattaaggctgagccgattcagaatggccgccagggtgggcgtcagaacagcggtcgt
acggagcgtccggggcaggggcgtcgcgcggagggaccgcgtaacgcggcgccgcgtcag
gggcagaatcgccgcccgcgccgtccggccgagcagggtaaagggcgtaccgaagggcgc
taa
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