Endosymbiont 'TC1' of Trimyema compressum: AZF37_01325
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Entry
AZF37_01325 CDS
T07734
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ett
Endosymbiont 'TC1' of Trimyema compressum
Pathway
ett03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ett00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZF37_01325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ett03019
]
AZF37_01325
03009 Ribosome biogenesis [BR:
ett03009
]
AZF37_01325
Enzymes [BR:
ett01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZF37_01325
Messenger RNA biogenesis [BR:
ett03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZF37_01325
Ribosome biogenesis [BR:
ett03009
]
Prokaryotic type
rRNA helicases
AZF37_01325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
GSPE_N1E
Cas3-like_C_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMP19997
UniProt:
A0A191HSS7
LinkDB
All DBs
Position
207836..209464
Genome browser
AA seq
542 aa
AA seq
DB search
MEQKNFSELGISEAIQKAVNDIGYEEATTIQSMAIPLILEGKDVIGLSQTGSGKTAAFSI
PAIEMIENGSSRKPQVLIVCPTRELAIQASDEIRKFSKYREGIKTAPIYGGQPIDRQIRL
LKTGSAIVVGTPGRLMDLMRRNVLKLDQVKMVILDEADEMLTMGFKEDIETILKEVPEER
QTILFSATMSAQIMKIAKRFQKDPVQLKPMHQQLTVPTIDQYYFEVPRGAKIDVLCNALD
VYNPTRSIVFCNTKRQVEELQSELQSRGYLAVGLHGDIRQSSRTQILNSFKSGTNDILIA
TDVAARGIDVDDVEIVFNYDIPQDEEYYVHRIGRTGRAGKHGEAYTFVVGKKQIYALNEI
RRFTGKKIKLKAIPTNDDIFETKQNKLIEDIKEILEKGKDLSKYAAVIDSLMEENYTTID
IASALIKMKLKVKKKNNPLLTKENMSRSHSDENMVTFKMNIGKANDISVNNILSAVANAT
GLSGKVIGKITVNDKVSYFDVPAEEVEHVETAMVNTTIKGRRIKAVLSERKPDRRPPRKR
RR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaaaaatttttcagagttaggtatatcagaagccatacaaaaagcagttaat
gatattgggtatgaggaggctacaactattcagtcaatggctattcctttaatattagaa
ggaaaagatgtgattggtctatctcagacagggtctggtaaaactgcggcttttagtatt
ccggctattgaaatgattgagaacgggtcttcaagaaaaccccaagttctcattgtatgc
ccaactagagagttggcaatacaagcttccgatgaaattagaaaattttctaaatataga
gagggcattaaaactgcgccaatctatggaggtcaaccgattgatagacaaattcgtctt
ttgaaaactggctcagccattgtagtaggaacacctggtcgtttaatggatttaatgaga
cgtaatgttttaaaactagatcaagttaaaatggttattttagatgaagcagatgaaatg
cttacaatgggctttaaagaagatattgaaactattttaaaagaagtgcctgaagaaaga
caaactattttattttcagctactatgtctgctcaaataatgaaaattgctaaaagattt
caaaaggacccagtacagttaaaacctatgcatcaacagttaactgtaccaactattgat
caatattactttgaggtaccaagaggagctaaaatagatgtattatgtaatgcgctagat
gtttataatcccacccgttcaattgttttttgcaacacgaaaagacaggtagaagagctt
caaagtgaacttcagagtagaggctacttagcagttggtcttcatggtgatattagacaa
agtagtagaactcagattttaaattcatttaaatcagggactaatgatattttaattgct
acagatgtggctgctagaggtattgatgtcgatgatgttgagattgtatttaactatgat
attccccaagatgaggaatattatgttcatagaattggcagaactggcagagccggtaaa
catggtgaagcttatacatttgttgttggcaaaaaacaaatatatgcgttaaatgaaatt
agacgctttactggcaaaaaaataaaattaaaagcaattccgacaaatgatgatattttt
gaaacaaaacagaataaattaatagaagatattaaagaaattttagaaaaaggtaaagat
ttatcaaagtatgcagctgtaattgattctttaatggaagaaaattatacaactattgat
attgcttccgctcttattaaaatgaaacttaaagttaaaaagaaaaataatccattgcta
actaaagaaaatatgagtcgctctcatagtgatgaaaatatggttacttttaaaatgaat
attggtaaagcaaatgatatttccgttaataatattttaagtgcagttgctaatgcaaca
ggtctttcaggaaaagtaattggtaaaattacagttaatgacaaagtcagctattttgat
gtgccagcggaagaggtggagcatgtggaaacagccatggttaatacgacaattaaaggt
cgtagaataaaagctgttttatctgaacgcaaaccagatagaagaccaccaagaaaaaga
agacgttaa
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