Escherichia coli UMNK88 (ETEC, porcine): UMNK88_1618
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Entry
UMNK88_1618 CDS
T02001
Name
(GenBank) RNase II stability modulator protein
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
eun
Escherichia coli UMNK88 (ETEC, porcine)
Pathway
eun02024
Quorum sensing
eun02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
eun00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
UMNK88_1618
02026 Biofilm formation - Escherichia coli
UMNK88_1618
Enzymes [BR:
eun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
UMNK88_1618
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
AEE56215
LinkDB
All DBs
Position
complement(1562484..1564469)
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AA seq
661 aa
AA seq
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MKTIRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVI
TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA
HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG
NAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD
SITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAI
LSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGI
ALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIEND
ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccattagggagtccacaacgttgtacaactttctcggatcgcacaatccatac
tggcggttgacggaaagcagcgatgttttgcgcttttctaccaccgaaaccacagaacct
gatcgtacattgcagttatctgccgaacaggctgctcgcatcagggaaatgacggtcatc
acctccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggta
ggacgaaaaatcaataaacgggaatgggctggcaacgcgtctgcatggcatgacacaccg
gcggttgctcgtgatttatcacacgggctttcctttgctgagcaggtagtttctgaagca
cattccgcaatagtgattctcgacagccgggggaatatccaacgcttcaatcggttatgt
gaagattacacagggttgaaagaacacgacgtcattgggcaaagcgtgtttaaactgttt
atgagccgtcgtgaagctgcggcatccaggcgcaataaccgtgtattttttcgaagcggc
aatgcatatgaagtcgaactgtggataccaacatgtaaaggccagcggctgtttctgttt
cgcaataaatttgtccacagcggcagtggcaaaaacgagatttttttaatctgttccggc
accgacattaccgaagagcgccgcgctcaggagcgactgcgtattctggcaaataccgac
agtatcaccggactgccgaatcgtaacgcaatgcaggatttaatcgatcacgctattaat
catgcagataacaataaagttggggttgtgtatcttgatttggataatttcaaaaaggtc
aacgacgcctatgggcatttgtttggtgaccagttattacgcgacgtgtcattggctatt
ttaagctgtctcgaacatgaccaggtgttggcgcgtccaggtggggatgagtttctggta
ctggcatccaacacctcacaaagcgcgctggaagcaatggcatcacgaattttgacccgc
ttacggctcccctttcgcattggtttaattgaagtttataccagctgttcagtaggtatt
gcactctctcccgaacatggttcagacagcacggctattattcgtcacgccgacacagca
atgtacacagcgaaggaaggcggacgaggacaattttgcgtttttaccccagaaatgaat
caacgggtatttgaatatctctggctggataccaacttgcgtaaagcactggaaaacgat
cagttggttattcactatcaaccgaaaatcacctggcgtggcgaagtgcgcagtctggaa
gcactagtacgttggcagtcacctgaacgtgggttgattccaccgttggacttcatttcc
tacgccgaagagtcagggctaattgtgcctttaggccgttgggtgattctcgatgtcgta
cgccaggtggcaaagtggcgggataaaggcataaacctgcgagtggcggtaaatatttct
gcacgtcagctcgccgatcaaaccattttcaccgccctgaaacaggttctccaggaactc
aattttgaatactgccctatagatgttgaactgacagagagttgtctgattgagaatgat
gaactggcactgtctgttattcaacaatttagccaactaggtgcgcaagtgcatctggat
gattttggtaccggctactcttcactttcgcaactggcgcgctttccgatcgatgccatc
aaacttgaccaggtttttgttcgagatattcacaaacaacctgtctcgcagtcactggtc
cgggcgatcgtcgctgtggcccaggcattgaatcttcaggtgatcgccgaaggtgtagag
agtgcaaaggaagatgcttttttaaccaagaacgggatcaatgagcggcaaggatttttg
tttgccaaaccgatgcccgccgtcgccttcgaacgctggtataaacgctatctgaagcgc
gcataa
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