Escherichia coli UMNK88 (ETEC, porcine): UMNK88_4591
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Entry
UMNK88_4591 CDS
T02001
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eun
Escherichia coli UMNK88 (ETEC, porcine)
Pathway
eun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UMNK88_4591 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eun03021
]
UMNK88_4591 (rho)
03019 Messenger RNA biogenesis [BR:
eun03019
]
UMNK88_4591 (rho)
Transcription machinery [BR:
eun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UMNK88_4591 (rho)
Messenger RNA biogenesis [BR:
eun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UMNK88_4591 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AEE59096
LinkDB
All DBs
Position
4469343..4470602
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AA seq
419 aa
AA seq
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MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgatggcgtactggagatattgcaggat
ggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctac
gtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaac
ttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggaacgtggtaacggttctactgaagatttaactgctcgc
gtactggatctggcatcacctatcggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaactatgctgctgcagaacattgctcagagcattgcttacaaccacccg
gattgtgtgctgatggttctgctgatcgacgaacgtccggaagaagtaaccgagatgcag
cgtctggtaaaaggtgaagttgttgcttctacctttgacgaacccgcatctcgccacgtt
caggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaagaaagacgtt
atcattctgctcgactccatcactcgtctggcgcgcgcttacaacactgttgttccggcg
tcaggtaaagtgttgaccggtggtgtggacgccaatgcccttcatcgtccgaaacgcttc
ttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatcgcgacggcgctt
atcgataccggttctaaaatggacgaagttatttacgaagagtttaaaggtacaggcaac
atggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagaactgctcactactcaggaagaactgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatggaattcctcatt
aataaactggccatgaccaagaccaatgacgatttcttcgaaatgatgaaacgctcataa
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