Eutrema salsugineum (saltwater cress): EUTSA_v10000075mg
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Entry
EUTSA_v10000075mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10000075mg
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10000075mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10000075mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10000075mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
EUTSA_v10000075mg
mRNA cycle factors
Stress granule specific factors
EUTSA_v10000075mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
Complex C specific factors
EUTSA_v10000075mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
Nup35_RRM
BRAP2
Motif
Other DBs
NCBI-GeneID:
18021989
NCBI-ProteinID:
XP_006404818
UniProt:
V4NJ20
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MAQVQAQAQANSSHSSPVTVGEGTVASGGSDGVNHGAMCSLYVGDLDFTVTDSQLYDYFT
DVCQVVSVRVCRDAATNTSLGYGYVNYSNSEDAEKALNKLNYTTLNGKMIRITYSSRDSS
ARRSGIGNLFVKNLDKSVDNKTLHETFSVCGSIVSCKVATDHMGQSKGYGFVQFESEDSA
KNAIEKLNGKMLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSETTTDDELKTTFGQ
YGNISSAVVMRDGDGRSRCFGFVNFENAEDAARAVEALNGKKFDDKEWYVGKAQKKSERE
LELSRRYEQGSRETGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS
KGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPG
MGPRMPIFPGGGPGIGQQIFYGQGPPPIIPHQAGFGYQPQMVPGMRPGFYGPMMQPGQQG
PRPGGRRSGDGPMRHQPQQPMSFMQPQMMPRGPGYRYPPGRNMQDGSMPGGMVPVAYDMN
GMPFPQPMPAGALASSLAQASPAQQRTLLGENLYPLVDQIEHENAAKVTGMLLEMDQTEV
LHLLESPEALNAKVSEALDVLRNVNQQQSQVSEGKSGSPSDLLASLTINDHL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggttcaggctcaggctcaggccaattcctcacattcatctccggttactgtc
ggagaagggacagtggcttctggcggcagcgacggagtgaatcacggtgctatgtgttcg
ctctacgtcggagatctggatttcactgtgactgattctcagctctatgactatttcacc
gatgtttgtcaggtcgtatctgttcgtgtttgccgtgacgcagccaccaatacttctctt
ggatatggttatgtcaactacagcaatagcgaagatgcggaaaaggcattgaataagttg
aactacactactctcaatgggaagatgattcggattacttactcttctcgtgactcttct
gctcgtagaagtgggattggaaacttatttgttaagaatttggacaagtcagttgacaac
aagactctgcacgagacgttttcagtgtgtggaagtattgtgtcctgtaaggttgctact
gatcacatgggtcagtccaaggggtatggttttgtgcagtttgagagtgaggattcagct
aaaaacgctattgagaagctgaatgggaaaatgctgaatgacaagcagatttttgttgga
ccttttctccggaaggaggaaagagagtctgctgctgataagatgaagtttaccaatgtt
tacgtgaagaatctgtcggaaaccacaacggatgatgagctgaagacgacttttggtcag
tatggtaatatttcaagcgctgtggttatgagggatggagatgggagatccaggtgtttt
ggatttgtcaactttgagaatgctgaagatgcagcacgtgctgttgaggccctcaacggg
aagaagtttgatgataaggagtggtatgtaggtaaagctcagaagaaatccgagagggaa
cttgagttgagcagaagatatgagcaaggctcaagggagacaggaaacaagtttgacggt
ttgaatttgtatgttaagaatcttgatgatactgtcactgatgaaaagttgcgcgagctg
tttgccgagtttggtacaattacttcctgcaaggttatgcgagaccctagtggtactagc
aaaggatcaggatttgttgccttctcagctgccagtgaagcatctagagtgctgaacgaa
atgaatggtaaaatggttggtggcaaaccgttgtatgttgctcttgcacagaggaaggaa
gaaagaagggctaagctgcaggcacagttttcccaaatgagacctgcctttattcccggt
atgggtcctcgtatgccaatattcccaggtggtggtccaggtattggccaacagattttt
tacggtcaagggcctccaccaatcatccctcaccaggctggatttggatatcagcctcag
atggttcctggaatgaggccaggcttttacggcccgatgatgcagccaggtcagcaaggt
ccacgaccaggtggcagacggtcaggtgatggacccatgcgccatcagcctcagcaacca
atgtcctttatgcagccacagatgatgccaagaggacctgggtaccgttaccctcctggt
agaaacatgcaggacggctcaatgcccggaggaatggttccagttgcttatgacatgaat
ggaatgccttttcctcagcctatgcccgctggtgcattggcttcttcccttgctcaagcc
tcacctgctcagcagagaacacttctaggtgagaatctatacccattagtggatcagata
gagcacgagaacgctgccaaagtgaccggtatgcttctggagatggatcagactgaagtt
ttgcatctgctcgagtcaccggaggctctaaatgctaaagtttcagaagcattggatgtg
ttgagaaacgtgaaccagcagcaatcgcaggtgagtgaaggcaagagtggaagcccaagt
gatctcttggcttctcttaccattaatgatcacttatga
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integrated database retrieval system
