Eutrema salsugineum (saltwater cress): EUTSA_v10000743mg Help Entry EUTSA_v10000743mg CDS       T02985                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism eus  Eutrema salsugineum (saltwater cress) Pathway eus03013   Nucleocytoplasmic transport eus03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:eus00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     EUTSA_v10000743mg    03015 mRNA surveillance pathway     EUTSA_v10000743mg  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:eus03019]     EUTSA_v10000743mg Enzymes [BR:eus01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      EUTSA_v10000743mg     5.6.2.5  RNA 5'-3' helicase      EUTSA_v10000743mg Messenger RNA biogenesis [BR:eus03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      EUTSA_v10000743mg    mRNA cycle factors     Common to processing body (P body) and stress granule      EUTSA_v10000743mg BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase NPHP3_N nSTAND3 Helicase_RecD Viral_helicase1 PhoH AAA_16 SRP54 ATPase AAA_22 Ribosomal_S13_N AAA AAA_32 Motif Other DBs NCBI-GeneID:  18016219 NCBI-ProteinID:  XP_006398395 UniProt:  V4LJ67 LinkDB All DBs Position Unknown AA seq 1202 aa AA seqDB search MDSQQSDLFETASQPDTVPDAYTFLEFNSQGDSEFDYPEFRSPTAWPTPSDSISIVDPSD RGGGGAAADHHSEASSPSSLSASAGNGGKVGRGGVGASGGVSCSSQVDALATGMGNLNFE EAGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLV RAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKD MNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLE KPGVDDEPQPVQTKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKR VAYFVFPKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVP IDVNHGFCVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRR FGVFGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMSKQGQGQVLVCAP SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL KDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQ ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQV QYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISAS GTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKE IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGIIGNDNYG SGNADRRGSRGRAGGSYMPSGPPNGARLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPV GAAPQPGNHGFGAGRGSSVGGHLPHQQATQHNVGTIGPNLNFPLDSPNSQPSPGGPLSQP GYGSQAFRDGFMGGISQDFLGDDFKSQGSHVPYNMAEFSTQASQGGYAVDYATQGAHGAF PGNFMNQNSQGGYSRFGGSNEFMSQEYMAHGGAQGLFTQAGFIDSSQDDGQQHPFGVNQW RI NT seq 3609 nt NT seq  +upstreamnt  +downstreamnt atggattctcaacagagcgatctctttgagacggcatcgcagccagacacggtgcccgac gcgtatacctttttggaattcaattctcaaggtgattccgagttcgattacccagagttc cgatcaccgacggcatggccgaccccgtctgattccatctccatcgtcgacccttccgat cgcggcggaggaggagctgccgcggatcatcattccgaggcttcgtcaccgtcttccctt tctgcaagtgccgggaatggcggcaaagtgggacgtggtggagttggggcaagtggcggt gttagttgtagcagccaggtcgatgcattggccacgggtatgggaaatttgaactttgag gaggctggagacgatgatggtttcgattatggtaagaatgatttcacggagcacgcgtgt aagtattgtggtatctcgaacccagcttgcgtggttagatgtaatgtggcgtcctgtagg aagtggttctgcaattcaaggggtaacacctccggctcgcatatcgtgaatcacctggtt cgagcaaaacacaaggaagtttgtctccatagagacagtccgctaggggaaacaattctc gaatgctacaactgtgggtgtcgaaatgtctttcttctcggtttcatctcggcaaagaca gacagtgttgtcgttcttctctgtagagatccttgtttaaatgtaaatgccttgaaggat atgaactgggacctaagtcagtggtgtcccttgattgacgacaggtgtttcctcccttgg cttgttaaggtcccatcagagcaggaacaattgagggcacgccaaattagtgcacagcaa ataaataagatagaagaattatggaagacaaatccggatgctacccttgaggaccttgaa aaacctggtgtagatgatgaacctcagcctgttcaaaccaagtatgaagatgcatatcag tatcaaaatgtgtttgcacctcttattaagctcgaagcagattatgacaagatgatgaaa gagtctcaaagcaaggaaaacctcacagttcggtgggatattggtcttaacaagaagcgc gttgcatacttcgtcttcccaaaggaggaaaatgaattgcgattggtgcctggtgatgaa ctacgtcttcgctactcaggagatgctgctcatccagcttggcaatcagttgggcatgtg atcaagctaactgcacaagaggaggttgctcttgaactccgagctaatcagggagttcca attgatgtgaaccatggtttctgtgttgattttgtttggaaaagtacaagctttgatcga atgcagggagcaatgaagaattttgctgtagatgaaacaagtgtgagtggttatatttac catcagttattgggacatgaagttgaggcccagatggtccgaaacacactacctcgacgt tttggagtttttggtcttccagaactgaatgcatctcaggttaatgcggtgaagagtgtc cttcagaagcccatcagcttgattcaaggtccacctggcacaggcaaaactgtgacttct gctgcaattgtgtatcacatgtcaaaacagggccagggacaggtcctcgtttgcgcccca agcaatgttgctgtcgaccaactagcggaaaaaattagtgctactggtttaaaggttgtt cgcctttgtgcaaagtcaagggaagctgtaagttctcctgtagagcatttgactcttcac taccaggtacggcatcttgacacatctgagaagagcgaactgcataagctacagcagttg aaagatgaacaaggtgagctgtcaagcagtgatgaaaagaaatacaaaaatttgaaacga gctacagaacgcgagataacccagagtgctgatgtcatttgctgcacttgtgttggtgct gcggatcttcggttgtcaaattttagatttagacaggtacttattgatgagtctactcaa gctacagaacctgagtgccttattcctttggtcctcggggtaaagcaggttgttctcgtt ggtgatcattgtcagcttggccccgtcattatgtgcaagaaagcagctcgtgctggcttg gcgcagtctctctttgaacgccttgtgactcttggtattaaaccaattagattgcaggtt caatatcgtatgcatccagctttgtccgagtttccatccaatagcttctatgaaggaaca ctacagaatggagtcacaattattgaaaggcaaacgacagggattgatttcccatggcct gtgcctaaccggcccatgtttttctatgtccagctggggcaagaggagatcagtgctagt ggaacgtcatatttaaatagaaccgaggctgctaatgtggagaaacttgtgaccgctttc ttaaagagtggagttgtccctagtcagattggagtgataactccatacgagggacagagg gcatacattgttaattacatggcaagaaatggttctctccgacaacaactttacaaggaa attgaggttgctagtgttgattcttttcaaggaagagaaaaagattacatcatattgtcc tgcgttagaagcaacgagcatcagggcattggatttcttaatgatccacggaggctcaac gttgcacttacacgtgctcgttatggaattgttattcttggaaacccgaaggttcttagt aaacagcctctgtggaatggcttgctgacacattacaaggaacacgagtgcttggttgag ggacctcttaataatttaaagcagagcatggtacagtttcagaaaccaagaaagatttac aatgatcgaagactattttatggtggtggggctggcataattggaaatgacaattatggt tcgggtaatgctgatagaagaggcagccgtggaagggctggtggctcttatatgccttct gggccacctaatggtgctagactacacccagctggctacccaatacctagggtaccactt tcaccatttcctggtggtcctccttctcagccatacgctattccaactcgtggacctgtt ggtgctgctccccaacctggaaaccacggttttggtgctggtcgtggaagttcagtcggt ggccaccttccccaccaacaagccacccagcataatgttggaactattggccctaattta aactttcctcttgatagtccaaatagccagccttcacctggtggtccgctatcccaacct ggatatggtagccaagcgttcagggatggatttatgggtggcatatctcaggatttcttg ggtgatgattttaagagccagggatctcatgttccttacaacatggccgagttttccaca caggcctcacagggaggatatgctgttgattatgccacacaaggagcccatggagcgttt cctggaaactttatgaaccagaattctcaaggcggttattctcgtttcggtgggagtaac gaattcatgtctcaggagtatatggcacatggaggagcacaaggtcttttcacccaagct ggctttatcgactcatcccaggatgatggacaacagcatccttttggtgtgaaccagtgg cggatctaa

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