Eutrema salsugineum (saltwater cress): EUTSA_v10000752mg
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Entry
EUTSA_v10000752mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10000752mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10000752mg
03012 Translation factors [BR:
eus03012
]
EUTSA_v10000752mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10000752mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
EUTSA_v10000752mg
Translation factors [BR:
eus03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
EUTSA_v10000752mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
NPHP3_N
ATPase
nSTAND3
AAA_19
Dicer_dimer
NACHT
ABC_tran
ATPase_2
AAA_23
PhoH
Motif
Other DBs
NCBI-GeneID:
18016010
NCBI-ProteinID:
XP_006398498
UniProt:
V4N3S3
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MKDRLPPSLYVPPHQRLRSLPPDYAFHPLPLSHSQSQQTLLPIRYVSAYDDRVSVEASDR
ETVTFHCANWDEWERKLSLLLRDSVKQEVISREKKDRRDFDKLAKLATSLGLYSHAYAKV
VVFSKIPLPNYRFDLDDKKPQKEVNLHADLLKRVEAYLREYLSKKSKRIDRFPAKSFSRT
SSISSIATDEGLLEQPEPMAASKTTLDNILRRRNLQLRDRQEYWEESVEGRRMLECRRCL
PAFKQRDLLLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFCSIICTQPRRI
SAMSVSERVAYERGEQLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRNLRGVTH
VIVDEIHERGMNEDFLLIILKDLLPRRPELKLILMSATLDAELFSSYFGGAGVIHIPGFT
YPVRSHFLEDILEMSGYRLTPYNQVDDYGQERSWKMNKQIPRKRKSQIASVVEDALRGAD
FKEFSPETRESLSCWNPDCIGFNLIEFILCHICENESPGGILVFMTGWDDISSLKDKLQI
HPIFGNPDRVMLLACHGSMASFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDC
GKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGQCYHLYPKSVYDAFAEYQLP
EILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELIAVQKAIEYLKIIGALDENEYLTTL
GRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFS
RDHSDHLALVRAYEGWKRAVEESAVYDYCWKNFLSVQSMRAIDSLRKEFFSLLKDTGLID
GNPSTCNSGANDENLTRAVICYGLYPGICSIVHNERSFSLKTMEDGQVLLYSNSVNARDT
KIPYPWLVFNEKIKVNSVFLRDSTAVSDSALILFGGTISKGDFDGHLKMLGGYLEFFMKP
AVAEMYQTLKKELDEMIQSKLLNPKMDMQAHRELLLAIRSLVSEDGSDGRFVFGRQVLRP
LETSAVSTQPTSVSRTESGPGGDNSKSQLQTILTRAGHAAPMYKTKQLKNNKFQTAVEFN
QTQIMGQPCNNKKSAEKDAAAEAIQWLMGGGGAKESHEHVNHMSNLLKKSKTGHL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtcttcctccttccctctacgttccgccgcaccagcgacttcgctctctc
cctcccgattacgcctttcatcctcttcctctctcccactcgcaatcacaacagactctc
ttgcccattcgctatgtctctgcctacgatgaccgcgtttccgtcgaagcttctgatcgc
gagacggttacatttcattgtgcaaactgggacgagtgggaaagaaagttgtctctgctt
ttgcgtgattctgtaaagcaagaagttatttccagggagaagaaagatcggagggatttt
gataaacttgcgaaactcgctacaagtcttggattgtatagtcacgcatatgctaaggtt
gttgtgttcagtaagatcccactccctaactataggtttgatctagatgacaagaagcca
cagaaggaggtgaatttgcacgcggatcttcttaaaagagttgaagcttacctcagagaa
tacctcagtaaaaaatcaaagaggatagatagattccctgccaaatccttttcaagaact
agtagcataagcagcatcgctaccgatgaagggcttcttgagcaacctgagcccatggct
gccagcaagacgacactggacaacattcttaggcgaaggaatttacagctgcgtgatcga
caagaatattgggaggaatcggtagaaggtcggagaatgctggaatgtcgcagatgtctc
cctgctttcaagcagagggatttgctactgactgcgatttcacaaaatcaggttattgtt
atctctggagaaacaggttgtggcaagaccacacaaattccacagttcattttagaatcc
gagattgaagcaaatcgtggagctttttgcagtatcatatgtactcaaccaaggaggata
tctgctatgtctgtatcggagagggttgcttacgagagaggagagcagttgggtgaatcc
gttggatataaagttcgattggaaggtgttagaggaagagatactcgcctactcttctgc
acaacaggcattttgttaagaaggttgttggtagatagaaatttaagaggagttactcac
gttattgtggatgagattcatgagcgtggaatgaatgaagatttcttgcttatcattctt
aaagatctcctacctcgtcgcccggagcttaagctgattctgatgagtgcaactttagat
gctgagctcttctcgtcatactttggtggggcaggtgtaattcacattccaggctttacg
tatccggttcgtagtcattttctagaagatattctggagatgtccggatacagattgact
ccatacaatcaagttgatgattatggtcaagaaagatcgtggaagatgaacaaacagatc
ccaagaaaaaggaagagccaaattgcctctgtcgttgaggatgcactgagaggggctgac
ttcaaggaatttagccctgagactcgagagtctttatcttgttggaatcctgattgtatt
ggttttaatctcatagaatttatcctttgccacatatgtgagaatgagagtcctggtggt
attttagtttttatgactggatgggacgatatcagctctctgaaagataaactccagatt
catccaatctttggcaatccagaccgggttatgttgcttgcttgccatggttctatggca
agttttgagcagaggttaatatttgaagaacctgcaagtggagtaagaaagatagttctg
gccactaatatcgcagaaacgagcatcacgatcaatgatgttgcttttgttattgactgt
ggaaaggcaaaagagacctcctatgatgcattaaataataccccatgtttgcttccttct
tggatttccaaggtttcagctcagcagagaagaggaagagccggtcgtgttcaacctgga
cagtgttatcatctctacccaaagtctgtatatgatgcttttgcagaataccagctgcct
gaaattttgaggacgccattacagtcactgtgtctgcaaatcaaaagcttgaatctcgga
agcatatctgagttcctatcaagggcgctgcaatctcctgaactaatagcggttcaaaag
gccattgaatatctgaagattataggggcattagatgagaatgaatacctcacaactcta
ggtcgctatttgtccaagcttccaatggagccaaagcttggaaaaatgctcatactagga
gctattcttggttgccttgatcccatattgactgttgcggctggcctgagtgtgagggat
cctttcttgacacctctggacaagaaagatcttgcagaagccgcaaaatcccagttttca
cgtgatcacagtgatcatcttgcgcttgttcgggcatatgaggggtggaaaagggctgtg
gaagagtctgctgtatatgattactgctggaaaaactttctctcagtgcagtcgatgaga
gctattgattccctccgaaaagagttcttctcattactcaaggatacgggactaatagat
ggaaatccatcgacctgcaattcaggggcgaatgatgagaatcttacccgagcagttatt
tgctatggattgtatcctggaatctgctcgattgtgcataatgagagatcattttccctg
aagacgatggaggatggccaagttcttctttattcaaattctgtaaatgctcgggataca
aaaataccatatccctggttggttttcaacgagaagataaaagtgaactctgttttcttg
agggattcaacagctgtctctgactctgcgcttattctctttggcggtaccatttctaaa
ggagactttgatggccacctgaaaatgttgggaggatacttggagtttttcatgaaacct
gctgttgcggaaatgtaccaaaccttaaagaaagagcttgacgagatgatacagagcaaa
ctactcaatcctaaaatggacatgcaagcacaccgtgaactcttactagctatacggtcg
ttggtctctgaggatggaagtgatggaagatttgtgtttggtcgacaagtacttcggcct
ttagaaacgtcggctgtctcaacacaaccgacatcggtttcaaggacagaaagtgggcca
ggaggcgacaattccaagagccagctccaaacaatactcactagggctggtcatgcagca
ccgatgtataagacaaagcaattgaagaacaacaagttccaaacagcagtagagtttaac
cagacgcagatcatgggacagccttgcaacaacaagaagagtgctgagaaggatgctgca
gctgaagctatacaatggctgatgggtggaggtggggctaaggaaagccatgagcacgtg
aaccatatgtcaaacctgctgaagaaaagcaagacaggtcacctctga
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integrated database retrieval system
