KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10000860mg
Entry
EUTSA_v10000860mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10000860mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10000860mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    EUTSA_v10000860mg
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR75_1st PRP4 ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 eIF2A Beta-prop_SPT8 WD40_like STELLO
Other DBs
NCBI-GeneID: 18016137
NCBI-ProteinID: XP_006398360
UniProt: V4LJ36
LinkDB
Position
Unknown
AA seq 517 aa
MELNKEDNVSLPPPMAPIPMAPPPATRPPTFRPQNGGEKSSESDSESEDEHYEISEESRQ
VRERREKALKDMQIKRRAAALAVPTNDKAVRDRLRRLGQPITLFGEQEMERRARLAQHMA
RLDIDGQLDKLLRAHEEDIAPPKEEVDDEILEYPFFTEGPKELREARIEISKFSIKRAAV
RIQRAKRRRDDPDEDMDAETKWALKHAKGMVLDCSNFGDDRPLTGCSFSRDGKILATCSL
SGVTKLWEMPQVTNKISVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTLVQTF
EGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDVNTGAELLLQEGHSRSVYGIAFQQDGAL
AASSGLDSLARVWDLRTGRSILVFQGHIKPVLSVNFSPNGYHLASGGEDNQCRIWDLRMR
KSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLD
IAADTSCIATVSHDRTIKLWTSSSNEEDQSGDMDIDL
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggaactcaacaaggaagacaatgtttcattgccaccaccaatggctccaataccaatg
gctccacctccagctacccgtccaccaacttttaggccacaaaatggtggagaaaaatcg
agtgaatcggattcggaatcagaggatgaacattatgagatatctgaagagagtaggcag
gtcagagaaagacgagaaaaggcactgaaagacatgcagataaaacgtcgtgctgctgct
ctcgcagttccaacgaatgacaaagctgtgagggatcgccttagacgacttggtcagccc
attactctgtttggagaacaggaaatggagagaagagctaggttggctcagcatatggct
aggcttgatatcgatggccaattggataaactgcttagagctcacgaagaagatatcgct
cctccaaaagaggaagtggatgatgaaatacttgaatacccgtttttcactgagggtcca
aaggaactaagagaggctagaattgaaatttccaaattttctatcaagagagctgctgtc
agaattcagcgtgcaaagcgtcgaagggatgatccagatgaagatatggatgcagagact
aagtgggctttgaagcatgctaaaggcatggtccttgattgcagtaattttggggatgat
cgtcctcttaccggctgctccttctcacgcgatgggaaaatacttgccacatgttctctg
agtggagttactaaattgtgggagatgcctcaagttacaaacaagatttctgtcttgaag
gatcacaaagaacgtgcaactgatgtagtgttctcccctgtggatgattgtctagcaact
gcttctgctgatcgaactgcaaagttgtggaaaactgatggaacactcgtacaaactttt
gaaggtcatctggatcgtcttgcacgcgttgccttccacccatcagggaagtacctcgga
acaacaagctttgacaaaacatggagactgtgggatgtaaacactggagcagagctgctt
ttgcaagaaggtcatagtcgtagtgtctatggaattgcatttcaacaagatggagcatta
gcagcttcttctgggcttgattcactcgcacgggtttgggatctccgcactggtaggagt
attctcgtcttccaaggacacattaaaccggttctctcagtgaatttctctcctaatggt
tatcacttggcatctggtggtgaggataatcaatgccgtatttgggatctaagaatgaga
aagtcattgtacattataccagctcatgctaaccttgtgtctcaagtcaagtatgaacca
caagaaggatacttcctagccactgcctcatacgacatgaaagtcaatatatggtcaggc
agagatttctcgcttgttaaaagcttagcagggcacgagtcaaaagtcgcctctctagat
atcgctgcagatacctcctgtattgctactgtttcacatgaccgcaccatcaagctttgg
acgagcagtagcaacgaagaagaccaaagcggagatatggacatagatctctag

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