Eutrema salsugineum (saltwater cress): EUTSA_v10001339mg
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Entry
EUTSA_v10001339mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14306
nuclear pore complex protein Nup62
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EUTSA_v10001339mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10001339mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
EUTSA_v10001339mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
Exonuc_VII_L
ATG17_like
AAA_23
Motif
Other DBs
NCBI-GeneID:
18015651
NCBI-ProteinID:
XP_006397681
UniProt:
V4L666
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MSGFPSSFGQSNSGGGFAFGSSSVTSSSSASSTTSPLAFSFNQSSNPSSAGAPVFGFGST
VSNPVSSAAPSFGFGNPASTASTGFGFGSSAAPSPSFGFGSAVSSSASAPSLFGSSTNAS
ATAPASSPFGFVTSSTSQPLSSASVSAPSPFATSSSSSSSSLFGAPASAPTSLFGSSSAA
GSNSPLFGASSSPAGSTPPLFGAPSSGTGSTPSIFGASSSASGSSPSIFGASSSASGSSP
SIFGAAQSSASGSSPSLFGATGTSPSIFGSSSSAGSTPSRFGSSSSGVAASSPSPFGVSA
ITSSATNPMPTPASPFSASSISASAPSQTVSSSSSFSFGNLSTSSSAPATSTSPAVFSIA
TTTTTSSSTPAATSAPSSSAAASTATFPSFGVGSSATNSTPATSAATGFSFASSTSASGT
TSSFTGFAVPQTSTPASSSQPQTTSAAVSFNFPSSTSTAAPAISSATTTQTSLVVASSSG
PSTTVAAPVAGTPKLPSEITGKTVEEIIKEWNTELQERTGRFRKQANAIADWDKRILQNR
DVLLRLEIEVAKVVETQSSLERQLELIETHQQEVDRALQSMEEEAERIYNDERKSLLDDE
AASTRDAMYEQSELVERELEHMTEQIRSIIQSVNANQGGELEAVDGMSPLDVVVRILNNQ
LSSLMWIDEKAEEFSSRIQKIASQGSGADRELIAPKHWMS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttcccgtcgtcgtttggtcaatccaattccggtggaggattcgccttcgga
tcttcctccgttactagctcctcctctgcttcatctaccacatcccctctagctttctcc
ttcaaccaatcctcaaaccctagctccgccggagctcctgtatttggcttcggatccact
gtatcgaatcctgtttcctccgcagctccatcatttgggtttggaaatcccgcatccacc
gcatccaccggtttcgggttcggatcctctgctgctccgtctccatcattcggatttgga
tcagccgtgtcttcatctgcttctgctccctcactgtttggatcatctacgaatgcttct
gcaactgctcctgcttcttctcctttcggattcgtgacttcatcgacctctcagcctctt
tcatccgcgtctgtttcagcaccatctcccttcgcaacctcatcctcctcctcatcttca
tcgctattcggagcgccagccagtgctccaacgtccctttttggatcttcatctgccgcc
ggctcgaattcccctctcttcggggcatcctcatcgcccgctggctcaacgcctccccta
tttggcgcgccctcttcaggcaccggctccacaccttccatctttggcgcctcctcatca
gcctctggctcctcaccgtccatctttggcgcgtcctcatcagcgtctggctcctcaccg
tccatctttggcgcggcgcagtcatcagcctctggctcctcaccgtccctatttggagcc
accggtacgtcaccgtccatcttcgggtcgtcttcgtcagccggttcaacaccttctcgc
tttgggtcgtcctcgtcaggcgtagcggcttcttcaccatccccgtttggagtatccgcc
atcacttcctctgcaaccaatcccatgcctaccccggcttctcctttctccgcttctagt
atctctgcttctgctccttcacaaacggtttcgtcatcttcctccttctcatttggtaac
ctttcaacctcaagctcagcccctgcaactagcacatccccagcagtgttttctattgca
accaccaccactacttcttcttcgactcccgctgccactagtgctccatcttcttcagct
gcagcttctacagcgactttcccttcttttggtgtgggttcatctgcaaccaacagcacc
ccggctacttctgctgctacagggtttagttttgctagctcgacttctgcctctggaact
actagctcttttactggttttgctgtaccccagacatcaacacctgcatcatcttctcaa
ccacagactactagtgctgcagtctcattcaattttccatcttctacttctacggctgct
cctgctatcagttctgctactacaacacagacttctcttgttgtggcttcgagtagtggg
ccaagcacaactgttgcggctccagtggctggtactcccaagttgccatctgaaataact
ggcaaaactgttgaggagattataaaggaatggaatacggagctgcaagagcgtacaggg
agattccggaaacaggcaaatgcaattgcagactgggataagcggatcttgcagaaccgt
gatgttcttttgaggcttgagattgaagttgcaaaagtggttgaaacgcaatctagtttg
gaacgacagctggaattaatcgagactcatcaacaagaggttgatagagctctgcaaagc
atggaggaagaggctgagcgtatatataatgacgagcggaaatcacttcttgacgatgaa
gcagcatcaacaagagatgcaatgtatgaacagtctgagcttgtagaaagagaattggag
catatgactgaacaaatcagatcgataatacaatccgtaaatgcaaaccagggtggagaa
cttgaagcagttgatgggatgagtccacttgatgtagttgtcaggatcttaaacaatcaa
ctcagttccttaatgtggattgatgagaaagctgaggaattctcttctcggattcaaaaa
atcgcatctcaaggctctggtgcagaccgtgaattgattgctccaaagcactggatgtct
tga
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