Eutrema salsugineum (saltwater cress): EUTSA_v10001405mg
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Entry
EUTSA_v10001405mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10001405mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10001405mg
03036 Chromosome and associated proteins [BR:
eus03036
]
EUTSA_v10001405mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUTSA_v10001405mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
EUTSA_v10001405mg
mRNA degradation factors
5'-3' decay
Decapping complex
EUTSA_v10001405mg
Chromosome and associated proteins [BR:
eus03036
]
Eukaryotic type
Gene silencing
piRNA pathway
EUTSA_v10001405mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18015629
NCBI-ProteinID:
XP_006397768
UniProt:
V4N245
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MLTSNQDWKAMLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQE
ESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVC
KELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCTMLVM
DEADKLLSAEFQPSIEELIQFLPQNRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLT
LMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIH
AKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS
GRYGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcttaccagtaaccaagactggaaggcaatgttgaagctgccacctcgagataatcgt
taccagacagaggacgtgactgccactaaaggaaatgaatttgaagattactttttgaag
agagatctactaaggggaatatatgaaaagggttttgagaagccatctcctattcaggaa
gaaagcattcctattgctttgactggcagtgatattcttgctagagccaaaaatgggaca
ggaaagactggtgccttctgcatcccaacccttgagaaaattgatccagagaacaatgtc
attcaagccgtaattctagtccctacccgagagctggcccttcagacatcacaagtttgc
aaggagctttccaaatacttgaaaattgaggttatggtcaccactggcggtactagtctg
agggatgatatcatgcgattgtaccaacctgttcatctgctggtaggaactcctggaaga
atattagatcttgccaaaaagggtgtgtgtgttttgaaagattgcacgatgcttgtcatg
gatgaggccgacaagcttttgtctgcagaatttcaaccttctatagaggagttgatacaa
ttcttgccgcaaaaccgacagattttgatgttttcagctacatttcctgtcactgtcaag
tcctttaaggatcgatatctcaggaagccttacattatcaatctcatggatcagctcaca
ctaatgggtgtcacacaatattatgcttttgttgaagagagacagaaggtgcactgcctt
aacacgcttttctctaagctgcaaataaaccaatccattatcttttgcaactctgtcaat
cgtgtggagctgttagccaagaaaatcacagagctcggttactcatgcttctatattcat
gcaaagatggttcaagaccaccgtaacagggttttccatgatttccgcaacggtgcatgc
agaaaccttgtttgcactgatttgtttacacgtggtattgacattcaagctgtgaatgtg
gtcattaatttcgatttcccgaggacttctgagtcgtatctacacagggtaggtagatca
ggaagatatggacaccttgggttggctgtgaatttggtaacttatgaggaccgcttcaaa
atgtaccaaactgagcaagaacttggaaccgagatcaagccaattccttcacttatcgac
aaggcaatctactgtcagtga
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