KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10001405mg
Entry
EUTSA_v10001405mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10001405mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10001405mg
   03036 Chromosome and associated proteins [BR:eus03036]
    EUTSA_v10001405mg
Enzymes [BR:eus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     EUTSA_v10001405mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     EUTSA_v10001405mg
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     EUTSA_v10001405mg
Chromosome and associated proteins [BR:eus03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    EUTSA_v10001405mg
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 18015629
NCBI-ProteinID: XP_006397768
UniProt: V4N245
LinkDB
Position
Unknown
AA seq 406 aa
MLTSNQDWKAMLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQE
ESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVC
KELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCTMLVM
DEADKLLSAEFQPSIEELIQFLPQNRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLT
LMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIH
AKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS
GRYGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgcttaccagtaaccaagactggaaggcaatgttgaagctgccacctcgagataatcgt
taccagacagaggacgtgactgccactaaaggaaatgaatttgaagattactttttgaag
agagatctactaaggggaatatatgaaaagggttttgagaagccatctcctattcaggaa
gaaagcattcctattgctttgactggcagtgatattcttgctagagccaaaaatgggaca
ggaaagactggtgccttctgcatcccaacccttgagaaaattgatccagagaacaatgtc
attcaagccgtaattctagtccctacccgagagctggcccttcagacatcacaagtttgc
aaggagctttccaaatacttgaaaattgaggttatggtcaccactggcggtactagtctg
agggatgatatcatgcgattgtaccaacctgttcatctgctggtaggaactcctggaaga
atattagatcttgccaaaaagggtgtgtgtgttttgaaagattgcacgatgcttgtcatg
gatgaggccgacaagcttttgtctgcagaatttcaaccttctatagaggagttgatacaa
ttcttgccgcaaaaccgacagattttgatgttttcagctacatttcctgtcactgtcaag
tcctttaaggatcgatatctcaggaagccttacattatcaatctcatggatcagctcaca
ctaatgggtgtcacacaatattatgcttttgttgaagagagacagaaggtgcactgcctt
aacacgcttttctctaagctgcaaataaaccaatccattatcttttgcaactctgtcaat
cgtgtggagctgttagccaagaaaatcacagagctcggttactcatgcttctatattcat
gcaaagatggttcaagaccaccgtaacagggttttccatgatttccgcaacggtgcatgc
agaaaccttgtttgcactgatttgtttacacgtggtattgacattcaagctgtgaatgtg
gtcattaatttcgatttcccgaggacttctgagtcgtatctacacagggtaggtagatca
ggaagatatggacaccttgggttggctgtgaatttggtaacttatgaggaccgcttcaaa
atgtaccaaactgagcaagaacttggaaccgagatcaagccaattccttcacttatcgac
aaggcaatctactgtcagtga

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