Eutrema salsugineum (saltwater cress): EUTSA_v10001929mg
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Entry
EUTSA_v10001929mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K07466
replication factor A1
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03030
DNA replication
eus03420
Nucleotide excision repair
eus03430
Mismatch repair
eus03440
Homologous recombination
eus03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUTSA_v10001929mg
03420 Nucleotide excision repair
EUTSA_v10001929mg
03430 Mismatch repair
EUTSA_v10001929mg
03440 Homologous recombination
EUTSA_v10001929mg
03460 Fanconi anemia pathway
EUTSA_v10001929mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eus03000
]
EUTSA_v10001929mg
03032 DNA replication proteins [BR:
eus03032
]
EUTSA_v10001929mg
03400 DNA repair and recombination proteins [BR:
eus03400
]
EUTSA_v10001929mg
Transcription factors [BR:
eus03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
EUTSA_v10001929mg
DNA replication proteins [BR:
eus03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
EUTSA_v10001929mg
DNA repair and recombination proteins [BR:
eus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
EUTSA_v10001929mg
MMR (mismatch excision repair)
EUTSA_v10001929mg
DSBR (double strand breaks repair)
HR (homologous recombination)
EUTSA_v10001929mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
18025677
NCBI-ProteinID:
XP_006408983
UniProt:
V4NUJ1
LinkDB
All DBs
Position
Unknown
AA seq
642 aa
AA seq
DB search
MPISLTPNAITAIKAGDVNLKPLLQVLDIKLIGKSQERSKDRYRLLISDGISAQYAMLAV
QLNDRVKSAQVEKGSIVQLIDYICSDVKGRNLIVVLNMETIVPHSETIGNPTMSADSDTK
AQNPLSDLGSISPTNRFVFNEPSIQHFVNKAPSGGVNIQNPVNNTPTFRPSVQPSYQPPP
SYRNHGPIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLL
DSDGGEIRITCFNVVVDRFYDVIDVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTV
ELCPDEDGSIPRQQFSFRPISDIENAENNTILDIIGVVTSVNPSVPILRKNGMETHRRIL
NLKDESGKAVEVTLWGEFCNRDGRQLEELVESAFFPVLAIKAGKVSDFSGKSVGTISSTQ
LFINPDFPEAHILRNWFDHGGKDTASSSISRDNMPGGGSRNEIRKTVSQIKEEGLGRSDK
PDWVTVKATISFIKTDSFCYTACPLMIGDKQCNKKVTQTGTNMWLCDRCNQESEECDYRY
LLQVQIQDHTGLAWVTAFQESGEEIMGCPAKQLYSLKYELQNDEEFAEIVRNRLFHQYML
KLKIKEESYADEQRVKMTVVKVDMVNYISESKYLLNSLVRSL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgccgataagtttgactcccaacgccatcacggcgattaaagcaggcgacgtaaatttg
aagcctctgttacaggttttagatatcaaactgataggaaaaagtcaggagagaagcaag
gataggtaccgtttgctgatttcagatggtatctcagctcaatatgctatgctcgcggtt
cagctcaatgatcgagtcaagtcggcacaggttgagaagggatccattgttcagctgatt
gattacatttgcagcgacgttaaaggccgcaaccttattgtggtgctgaacatggagacc
atagtaccacattctgaaactattggcaaccccacaatgtctgcagattcagatacaaaa
gcccaaaacccgctctcagatctgggcagtatatcgcctacaaataggtttgtttttaat
gagccgtcgatccagcattttgttaataaagcaccttccgggggcgtaaacattcaaaat
ccagtcaacaatactccaactttcaggccatctgttcaaccttcatatcaaccacctcca
agctacagaaatcatggacccataatgaagaatgaagctccagctcgaatcatccctatt
gctgctctcaacccataccaaggtcggtgggctattaaggctagagtaactgcaaaagga
gatatcagacgatataataatgccaaaggagacgggaaagttttctcctttgacctgctt
gactctgatggaggggagattcgtattacttgctttaatgttgttgttgaccgattctat
gatgttatcgatgttggcaaggtctatttgatctcaaagggaagtttgaagcctgcacag
aaaaatttcaaccacttaaagaacgaatgggaaatttttttggagtcaacttcgactgta
gagctttgccctgatgaagatggctccataccaaggcagcagttctccttccgtcctata
agtgacattgagaacgctgagaacaatacgatactcgatatcattggagttgtgacttct
gtgaatccctcagtgccaatcttgagaaagaatgggatggaaacccataggagaatcctg
aatctgaaggatgaatctggtaaggccgtagaagttacgctatggggagaattctgtaat
cgagatggtcggcaactcgaagagttggtcgagtcagcttttttcccggttttagcaata
aaagctggtaaagtgagtgacttcagtgggaaatcagttgggactatatcgtcaacacag
ctcttcataaatccagattttcctgaagcgcatatactgagaaattggttcgatcacggg
gggaaagatactgcctcctcttccatttccagagacaatatgcctggaggaggttcgagg
aacgagataagaaaaactgtttctcagatcaaagaggaaggtcttggaagatcagataag
cctgactgggtcactgtgaaagcaactatatcattcatcaaaaccgatagcttctgttac
acagcttgtcctttgatgattggagataaacaatgcaacaaaaaggtgacacagactgga
acaaacatgtggctctgtgaccggtgcaaccaagagtccgaggaatgcgactacagatac
ctacttcaggtgcagattcaagaccacacaggattggcttgggttaccgcgtttcaagaa
tccggtgaagagatcatgggttgtccggctaagcagctttacagcctgaaatacgaattg
cagaatgatgaagaattcgcagagattgttagaaacagactgtttcatcagtacatgttg
aagctgaagatcaaagaagaatcgtacgcggatgaacaaagagtgaagatgaccgtggtg
aaggtagatatggttaattacatatccgagagtaaatacttgctcaattcgctcgtaagg
tctctatag
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