Eutrema salsugineum (saltwater cress): EUTSA_v10002449mg
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Entry
EUTSA_v10002449mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10002449mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10002449mg
Enzymes [BR:
eus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
EUTSA_v10002449mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
EUTSA_v10002449mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
CHASE3
Motif
Other DBs
NCBI-GeneID:
18014131
NCBI-ProteinID:
XP_006418630
UniProt:
V4MXB5
LinkDB
All DBs
Position
Unknown
AA seq
610 aa
AA seq
DB search
MQRRFLSSVSVSAGGSKTLNNGRWSVKQVKKSNFKSTLDEIRTSIDSSDFVALSLQNTGS
YAAAWHRISAIDTPQMSYLKAKYAAERYQILQFALCPFSLRGSKLTVHPYNFHLFPRDEL
KLGMPSYSFSCQASRLTAMAREGFDFNACIYEGISYLSREQESASKFLSGNPILAEPVAA
PSSPSTVADTVFVGRIRSRVKNWRQSCLDSSSKTGDDDLVSSLRKLVLGSEQYGSRLCLT
IDVCSERQVQLILEMLTEFADDVVPLLIASKSGGTQAVRAVFMSSKEDMDRFKRELQDLE
NEENRRLRGFREVVDLISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFP
NVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVANQGCPIKLDESHQMHGQNAV
MISQLFAKLSTIQKSDYQSSVQPSEDSYALASDQHASDENVQVWSKNSRRVSSENLVFIW
GLAKKMTASTLKNVLQKSHNVFAQEFDVKLLDRSCAVVVFWQPSSSETFLSAVNNEDQLL
GGSLRVMVAEGLRAAGYETYKRACRLGFWEADLADSLDKTLESSDTDLDSDTKPSEISWT
SELAINFDEL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcgcttcctttcatcggtttccgtttccgccggcggtagtaaaaccctaaat
aatggaagatggagtgttaagcaagtgaaaaaatccaacttcaaatccactctagatgag
attcgcacttcaatcgactcatcggacttcgtagctctctccctacaaaacaccggctcc
tacgccgccgcgtggcaccgtatctccgccattgatacgccgcagatgagctacttgaaa
gctaaatacgccgccgaacgctaccagatcctccagttcgctctctgtcctttctccctt
cgcggctccaagctcaccgttcacccatacaacttccatttgtttcctcgagatgaattg
aagctagggatgccttcttatagcttctcttgtcaagcctctcgtttaacagccatggct
agagaaggatttgatttcaacgcctgcatctacgaaggaatttcatacttatcaagagaa
caagagtctgcgtcgaagtttctctccgggaatccgatattagctgaacccgttgctgca
ccgtcttctccgtctactgtagctgataccgtctttgtaggaaggattaggtcacgcgtc
aaaaactggagacaatcttgtttagattcgagctcaaagacaggagatgatgatttggtg
agttctctgaggaaactggtcttggggagtgagcagtatggttcgaggctttgcttgact
attgatgtttgtagcgagcgtcaagtgcaactcatcctagagatgttgaccgaattcgct
gatgatgttgtccctctactcatcgcttcaaagagtggaggaacacaagcagttcgtgct
gtctttatgagttcgaaggaagacatggatagatttaagagagagcttcaagatcttgaa
aacgaagagaacaggcgacttcgtggcttccgagaagtggtcgatttgatctcttcttca
cagaaacctgttgtctcccagaactatctaagcgattttacttccattcatgccaaattc
cttggtcctctaccttcaaatgtggatgacttcagcagttcactgagctcagcttttccc
aatgttgtggatctcagtcaattcatgaaagaaattagtcccttgagtaatataagtaat
ctacctgcagctatgtcttccttgaatcggttctttgcacctgtggatgtggaagtggca
aatcaaggctgtccgatcaaattagacgagagtcatcagatgcacgggcaaaatgctgtt
atgatatctcagctttttgccaaactaagtaccatacagaaatcagattatcaatcctct
gtccaaccatctgaagattcctatgctttggcttctgatcaacatgcaagcgatgaaaat
gttcaagtctggtcaaagaacagccgaagagtaagctctgagaacttggtgttcatatgg
ggattggcgaaaaagatgacagcttcaacgctgaagaacgttctgcaaaagtcacacaac
gtttttgcgcaagagtttgatgttaagttattagacaggagctgtgcagttgtggtcttt
tggcagccgagttcatcggagactttcctcagtgcggttaacaatgaagatcagcttctt
ggtggttcgttaagagtgatggttgcagaagggctaagagcagcaggttatgagacttac
aagagagcatgtagattaggtttctgggaggctgacttggcggattctttagacaaaaca
ttggaatcttcagacacggatcttgattcagacaccaaaccttcagagattagttggacg
agcgaattggctattaattttgatgagttatga
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