Eutrema salsugineum (saltwater cress): EUTSA_v10002887mg
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Entry
EUTSA_v10002887mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
EUTSA_v10002887mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eus03400
]
EUTSA_v10002887mg
DNA repair and recombination proteins [BR:
eus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
EUTSA_v10002887mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
RT_RNaseH_2
Motif
Other DBs
NCBI-GeneID:
18013765
NCBI-ProteinID:
XP_006418741
UniProt:
V4L4F9
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
RSILSFFQKPSPTTQGLVSGDATSGGGGLRSTVKEEDVNGDDSVRSVERNVSKSVDEVRG
TDTPPEKVPRRVLPSSFKTAESAGGGASSLFSNIMHKFVKVDDRECSAERSREHVVPLHD
DSSVCTRADNVFPQCHSNNGQPQERDHAFSVSGTVGLRSVEDEGVDNDVLGPETPGMRPS
VPRLKRVLEDGMAIKENKVTALDSNKRLKMLQDPVCGDKKEVNEGTKFEWLEPSRIRDAN
RRRPDDPLYDRKTLYIPPDVFKKMSASQKQYWGVKSEYMDVVLFFKVGKFYELYELDAEV
GHKELDWKMTLSGVGKCRQVGISESGIDDAVQKLLARGYKVGRIEQLETSDQAKARGSNS
IIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEVKTELEKCSNVYGFAFVDCAALRFWVGS
ISDDASCAALGALLMQVSPKEVVYESKRLSREAQKALRKYTLTGSTAVQLSPLPQVMGDT
DACGVRKVIESNGYFRGSSESWNSAVDALAECDIALSALGELINHLSRLKLEDVLKNGDI
YPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLK
DVGSINKRLDVVEEFTANSEIMQITGQYLHKLPDLERLLGRIKSSVQSSASVLPALLGKK
MLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMKLLCKLCKLPIIVGKSGLELFLSQFEA
AIDSDFPNYQNQDVTGENAETLTILIELFIERASEWSEVIHTISCLDVLRSFAIAASLSA
GSMARPVVFPESKNTIQNQETNGPILKIQGLWHPFAVAADGQLPVPNDLLLGEAKSSSVH
PRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCETCELSLVDTIFTRLGASDRIMTG
ESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVERVQCRMLFA
THYHPLTKEFSSHPRVTLKHMACAFRSRSSGQEPRRCDQDLVFLYRLADGACPESYGLQV
ALMAGIPNQVVETASVAAQAMKRSIGENFKSSELRSEFSSLHEEWLKTLVGISQVIHSDK
AVFEEEDVYDTLFCLWHELRSSCSVAQ
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
agatcgattttgtctttctttcagaaaccctcgccgacgactcagggtttggtttcgggc
gatgctacaagcggcggaggaggtttacggtctactgtgaaggaagaagatgtaaacggc
gacgattcggtacgctctgtggaacgaaatgtatcgaaatctgtggatgaggtcagagga
actgatactccgccggagaaggttccgcgtcgtgtcctgccgtccagcttcaagacggct
gaatccgccggaggtggtgcttcgtcgctgttctccaatatcatgcataagtttgtaaaa
gtcgatgaccgagaatgttctgcagagaggagccgagaacatgtcgttccgcttcatgat
gattcgtccgtgtgtacgagagctgataatgtatttcctcaatgtcattccaataatggt
cagcctcaagaaagagaccatgctttcagtgtcagtgggacagttggtctaagatcagta
gaagatgaaggagtagataacgatgttcttggcccagaaacaccagggatgcgtccaagt
gttcctcgtttgaagcgagttctggaggatggaatggctatcaaggagaataaggtcact
gcattagattctaacaaaaggctgaaaatgcttcaggatccggtttgtggagacaagaaa
gaagtaaacgaaggaaccaaatttgaatggcttgagccttctcggatcagggatgccaat
agaagacggcctgatgatcccctttatgataggaagaccctatacataccacctgatgtt
ttcaaaaaaatgtctgcgtcgcagaagcaatattggggtgtcaagagtgaatatatggat
gttgtgcttttctttaaagtgggaaaattttatgagctgtatgagctagatgcagaagta
ggtcacaaggagcttgattggaagatgaccttgagcggtgtgggaaaatgcagacaggtc
ggtatctctgaaagcgggatagatgatgcagtgcaaaagctattagctcgtggatataaa
gttggacgaatcgagcagctagaaacatctgaccaagcaaaagccagaggttcaaattct
ataattccgaggaagctagttcaagtattaactccatcaacagcaagcgagggtaacatc
ggtcctgatgctgtccatcttcttgccataaaagaggtcaaaacggagctagaaaagtgt
tcaaatgtgtatggatttgctttcgttgactgtgctgccttgaggttttgggtcgggtcc
atcagtgatgatgcctcatgtgctgctcttggagctttattgatgcaggtttctccgaag
gaagtggtatatgaaagtaaacggctatcaagagaagcgcaaaaggctttaaggaaatat
acattgacaggttctacggcggtacagttgtctccacttccacaagtaatgggggataca
gatgcttgtggagtgagaaaagtgatagaatccaacggatactttagaggttcttctgaa
tcctggaactctgctgttgatgctctagctgaatgtgacattgcccttagtgcccttggg
gaactaatcaatcatctgtctaggctaaagctagaagatgtacttaagaatggggatatt
tatccatatcaagtttacaggggttgtctcaggattgatggccagacgatggtaaatctt
gaaatattcaacaatagctgtgacggtggtccttcagggaccttgtacaaatatcttgat
aactgtgttagtcccactggtaagcggctcttaaggaattggatctgccatccactgaaa
gatgtagggagcattaataaaagactcgatgtagttgaggaattcacggcaaactcagaa
attatgcaaatcactggccagtatctccataaacttccagacttggaaagactgctcgga
cgcatcaagtctagcgttcaatcatcagcctctgttttgcctgctctccttgggaaaaaa
atgctgaaacaacgagtcaaagcatttgggcaaattgtgaaagggttcagaagtggaatt
gatcttctgttggctctacagaaggaatcaaatatgatgaaattgctttgtaagctatgt
aaacttcctataatagtcggaaaaagcgggctagagttattcctatctcaatttgaagca
gccattgatagcgactttccaaattatcagaaccaagatgtgacaggggagaatgcggaa
acgctcacaatacttattgaactatttatcgaaagagccagcgaatggtctgaagtcatt
cacaccataagctgcctcgatgtcctgagatctttcgcaatcgctgcaagtctatctgct
ggaagcatggccaggcctgttgtttttcccgaatcgaaaaacacaattcagaatcaggaa
acaaatgggccaatacttaaaatccaaggactatggcatccatttgcagttgcagccgat
ggtcaattgcctgttccaaatgatttactccttggcgaggctaaaagcagcagcgtacat
cctcggtcgttgctactcacaggaccaaacatgggtggaaaatcaactcttcttcgtgcc
acatgtcttgccgttatctttgcccagcttggttgttatgtgccttgtgagacttgtgaa
ctctccctcgtagatacaatctttacaagacttggcgcatctgatcgaatcatgacagga
gagagtactttcttggtagaatgcacagagacagcgtcagttcttcagaatgcaactcag
gattcattagtaatccttgacgaacttggcagaggaactagtactttcgatggatacgcc
attgcatattccgtttttcgtcacctagtagagagagtccagtgccggatgctctttgca
acgcattaccacccactcaccaaggaattctcgtctcacccacgtgtcaccttgaaacac
atggcttgcgcattcagatcaagatcatctggtcaagaaccgcgtcgctgtgaccaagac
ttggttttcttgtaccgtttagctgatggagcttgtcctgagagctacggacttcaagtg
gctctcatggctggaataccaaaccaagtggttgagacagcatcggtcgcggctcaagcc
atgaagagatcgattggtgaaaacttcaagtcaagtgagctaaggtctgagttctcaagt
ctgcacgaagaatggctcaagacattggtgggtatctctcaagtcatccacagcgataaa
gccgtattcgaggaagaagatgtctacgacactttgttttgcttatggcatgagctcaga
tcctcttgcagtgttgcccaa
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integrated database retrieval system