Eutrema salsugineum (saltwater cress): EUTSA_v10003437mg
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Entry
EUTSA_v10003437mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10003437mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10003437mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10003437mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_10
TPR_14
TPR_8
TPR_19
HEAT_Nup120
ARM_TT21_N
ARM_TT21
SRP_TPR_like
TPR_11
DUF5553
Motif
Other DBs
NCBI-GeneID:
18020409
NCBI-ProteinID:
XP_006403088
UniProt:
V4NEP9
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MDSRDSSSSVSSDAARDDDAIVLSITSALAKDALSYFQSCKFPECLDILIQLKQKKHNDP
KVLHNIAIAEYFRDGCSSSKKLLEELNSVKNQSEELASTAKEQVEAVNPGTNVCVSKDQF
DSTVTILNIAVIWFHLHQYTKSLSILEPLFQNIEPLDETIALQICFLLLDSALACRDAVK
FLAVFEHMVKTFGVGFGSHEEIGSTMQLSSNQVSRTSSFLSSSVASDALKSDLTAADSSL
CEETLDYDNVLAEIEAEKRMKPVGHIPSNNILKTLGERSILTVDLKLELQLYKVRFLLLT
RNLKLAKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHRKAIKLLMVSGIQKEARTSGI
FNNNLGCIYYQLGKYQTASVLFSKALRNCSSLRKENPVKLISLSQDKSLLITYNCGLLYL
ACGKPLLAAQCFQKASLVFSRQPLIWLRIAECCIMALQKGLLEEGNTSLDRSEIRVHVIG
KGKWRQLLMEENGSVELAGSTQWPKLSLPLARVCLSNGVYLLNGSILNDSKSDIESSLSL
KTNETTEASSPDHGEANTNSDLKGGMNQDMIQNSLSALEDIRSRENQLIKQALLANMAYV
ELELENPIKALSSANSLLQLPDCSKIYIFLGHIYAAEALCLLNRPVEAGAHLSAYLLGQD
DFKLPFAQEDFDQWRMHVSFDCEETADASTGNARDSVCLKPEEARGVLFANLAALLATQG
HYDQAKPLIMHALTVLPNNVQATVTAVYIDLMLGRSQDALARLKQCTRVSFVPSRLEVRA
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggattctcgagattcttcatcatctgtatcttccgacgccgctagggacgacgacgct
attgttctctcaatcacatctgcactcgctaaagacgctctctcctatttccaatcttgc
aagttccccgagtgtctcgacattctgattcagctcaagcagaagaaacataacgatccc
aaggttcttcacaatattgcaattgcagagtacttcagggatggttgctccagttccaag
aaactactcgaagagcttaacagtgtcaagaatcagagtgaagaacttgcttctacagcc
aaagaacaagtggaagctgtaaaccctggaactaatgtctgtgtgtcaaaggatcaattt
gatagtacagtgacaatcctcaacattgcagtaatctggtttcatctacatcagtataca
aaatctttatccattctagaacctttgtttcaaaatattgagccgctagacgagacaatt
gcacttcaaatctgcttcttgttgctggatagtgcgctggcttgtcgcgatgctgtgaaa
tttttggctgtgtttgagcatatggtcaaaacttttggtgttggttttggaagtcatgaa
gaaattggaagcacgatgcaactttcttcaaatcaggtatccagaacatcttctttcctg
agcagctcggtggcctcagatgctctgaagtctgacttgacagccgctgatagtagtttg
tgtgaagaaactctagactatgacaatgttctcgcggaaattgaagccgagaaacgaatg
aagccagttggccatattccgtccaacaatattctcaagacattaggtgaaaggtcgatc
ttgactgtggatctgaagctcgaattgcagctttacaaggttcggttcttgcttcttacc
agaaacttgaaactggcgaagcgtgaagtcaaacacgcaatgaacattgctcaaaaacgg
gactcctccatggctctgctcttgaaatctcaactagagtatgcacatgggaatcatcga
aaggctataaagcttttgatggtctccggtattcaaaaagaagcaaggacttcaggaatc
ttcaacaacaaccttggttgcatatactatcagcttggaaaatatcaaactgcctccgtg
ttattttcaaaagcgctaaggaactgttcatcacttagaaaggagaatccagtgaagttg
atatctctctcacaggataagtctttgttgatcacatacaactgcggtttgctttatttg
gcttgtgggaagcctctacttgctgctcaatgcttccagaaggcaagcctagttttcagc
aggcaaccgctcatttggctccgtatagccgaatgctgtataatggctttacaaaagggt
cttttggaagaggggaacacttctttggatagatcggaaattagagtccatgtaattggg
aaaggtaagtggagacaacttttgatggaagaaaacggatctgtcgaacttgctggtagt
acccaatggccaaagctttcattaccactagcacgggtctgtctctcgaatggtgtttac
ttgctcaatgggtctatcttgaacgactctaaatcagatattgaatcttcattatccctg
aagacaaatgagaccacagaagcatcatcgcctgatcatggggaagctaatacgaactca
gacttgaaaggaggaatgaatcaggacatgattcaaaactcactctccgctttggaagac
atccgtagtagagaaaatcagttgatcaaacaggctcttctcgctaatatggcatacgta
gagttggaactggaaaatcctatcaaagccttgtcatctgccaattcactcttgcagctt
ccagattgttcaaagatttatattttcttaggccatatctatgcagcggaggctctctgc
ttgctcaacagacccgttgaagctggcgcccatttatccgcctatctacttggacaggat
gattttaaactgccatttgcgcaagaagactttgaccagtggcggatgcacgtaagtttc
gattgtgaagagacagctgatgcttccacaggaaatgcccgggattcagtttgccttaag
ccagaagaagctcgtggagtactttttgcaaaccttgccgcgctgcttgccacacaggga
cattatgaccaggctaaacctttgattatgcacgcgctaactgtcttaccgaataatgta
caagctacggttacagcggtctacatcgatctcatgttgggtaggtcacaagacgcactt
gctcggttaaaacagtgtacccgtgtgagctttgttcctagcagattggaagtgagagcc
tcgtag
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