KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10003625mg
Entry
EUTSA_v10003625mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10003625mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10003625mg
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10003625mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     EUTSA_v10003625mg
Spliceosome [BR:eus03041]
 Complex B
  Other components
   Prp19-related factors
    EUTSA_v10003625mg
 Complex C
    EUTSA_v10003625mg
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I NRDE-2
Other DBs
NCBI-GeneID: 18011496
NCBI-ProteinID: XP_006395029
UniProt: V4K459
LinkDB
Position
Unknown
AA seq 916 aa
MAISKDLYPSQEDLLYEEEILRNPFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERALVTMHKMPRIWVMYLQTLTVQQLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQEGIPIETSLRVYRRYLMYDPTHIEDFIEFL
VKSARWQEAAERLASVLNDDKFYSIKGKTKHTLWTELCELLVHHANVISGLNVDAIIRGG
IRKFKNDVGMLWTSLADYYIRKNLLEKARDIYEEGMMTVVTVSDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEDEIEENGVEEDYDDVRLNFSLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNPAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVILDKAVQVNYKNVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTKAVYEK
IMDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVNIFKYPHVKDIWVTYLTKFVKRYG
KTKLERARELFEHAVSKAPSDAVRTLYLQYAKLEEDYGLAKRAMNVYEEATKKVPDVQKF
EMYEIYISRAAEIFGVPKTREIYEQAIESGLPHKDVKLMCIKFAEVERSLGEIDRARTVY
KYASQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVTASYSQTHFILPENMMQK
DKMVDVEEAKDELKKAGLPEDQMAALERQLMAPTSTTDASKDGGRRVGFVSAGVISQSGE
NEGKPVTGNGEDIELPEESDDDESDGEDRVEIAQKEVPAAVFGGLSRKREEDGKEAAEGG
EKLGALERLKKQKLAQ
NT seq 2751 nt   +upstreamnt  +downstreamnt
atggctatttccaaggatctttatccatctcaggaggatctcttatacgaggaggagatt
ctgcgtaatccatttagcttgaaactttggtggaggtatttgattgctaaagctgaatct
cctttcaaaaagcgattcattatctacgagagagctctaaaagctcttcctggaagctac
aagttgtggtacgcttatcttcgagaacgactcgatatcgtcaggaatctccctgttact
catccccagtatgattcactcaacaatacatttgagagagctctcgtcacgatgcacaag
atgcccaggatttgggtcatgtatcttcagactctcacggtgcagcaactgattactcga
acccggagaacttttgaccgtgcgctctgtgctctgcctgtgacgcagcatgataggatc
tgggagccttatcttgtctttgtgagccaggaaggtattccgattgagacctctcttagg
gtttatcgaaggtatctcatgtatgatcctactcatattgaggattttattgagtttctg
gtgaagtctgctcgctggcaagaagctgcagagcgattggcctctgtgctgaatgatgat
aagttctattctattaaagggaagaccaagcatacgctttggacggagttgtgcgagctt
cttgtgcaccatgctaatgttatttcgggtctcaatgttgatgctattatcaggggaggc
attaggaagttcaagaacgatgttgggatgctgtggacttctctggcggattactacatt
aggaagaatttgcttgagaaagccagggatatctatgaagagggtatgatgacagtggtt
actgtgagcgacttcagtgttatatttgatgtttattcaaggtttgaggaaagcactgtt
gccaaaaagatggagatgatgagttcaagtgatgaagaagatgagatcgaagagaatggc
gtagaggaggattatgatgatgtccgtctcaatttttctctgtcggtaaaagagctgcag
aggaagatactgaatgggttttggctgaacgatgataatgatgttgatctgagattggct
cgcttggaagaactgatgaacagaagacctgcacttgcaaacagcgtgctccttaggcaa
aatccgcacaatgttgaacaatggcatcgtagggtcaaaatttttgagggaaacccagca
aagcagattctcacatacacagaggcagtgaggactgtagatcctatgaaagcagttggg
aagcctcacacgttgtgggttgcttttgccaagttgtatgaaaaccataaagacctggtc
aatacaagagtgattttggacaaggcagtccaggtaaactacaaaaacgtggaccatctc
gccagtgtgtggtgtgagtgggctgagatggagttgaggcacaagaatttcaaaggagca
ttagagctgatgaggcgtgctactgctgtaccgacagtagaagtcagacggagagtcgct
gctgatgggaatgagccagtccagatgaagctgcatagatccttgaggctctggtccttt
tacgttgatttggaggaaagcctcgggacgctagaatcgacgaaagcagtctatgagaag
ataatggatttgaggatagctacgcctcaaattattttaaattatgcttttcttcttgag
gaaaacaagtactttgaagatgctttcaaggtgtatgaaagaggtgtcaacatattcaag
tatcctcatgtcaaagacatatgggtaacttatcttacaaagtttgttaagagatatggg
aagacaaagctggagcgggcgagagagttgtttgagcatgcagtttcaaaggctccatct
gatgctgttaggaccttgtaccttcagtatgctaagctagaagaggattatggtctggcc
aagcgagccatgaatgtttatgaggaagccaccaaaaaggttccagatgtccagaagttt
gagatgtatgagatatacatttcccgtgcagcagagatattcggtgttcccaaaactagg
gagatatatgagcaagcaatagagtctggacttccacacaaggatgtgaagctcatgtgc
ataaaatttgcagaggtggagagaagcttgggagaaattgatcgtgctcgtacagtctac
aagtatgcctcacagttcgctgacccaaggtccgaccctgagttttggaacaaatggcat
gaattcgaggttcagcatggaaatgaagacacctacagagaaatgcttcggatcaagcgt
agcgttaccgcaagctacagtcagactcatttcattctaccagagaacatgatgcaaaag
gacaagatggtagacgtggaggaggcgaaagatgagctgaagaaagcaggtttgccagaa
gatcaaatggcagctttggagaggcagctcatggctccaacgtcgaccacagatgcgtca
aaagatggtggaagaagagttgggtttgtgagcgcaggagtcatttcacagtcgggtgag
aatgaagggaaaccagtgacagggaacggagaagatatcgagcttccagaagagagtgac
gatgatgagtctgatggagaagacagagtagagatcgctcagaaagaagtccctgctgct
gtgtttggaggactctcgagaaagagagaggaagacggcaaagaagctgcggaaggcggt
gagaaactgggtgcgttggagaggttaaagaaacagaaactagctcagtga

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