Eutrema salsugineum (saltwater cress): EUTSA_v10003625mg
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Entry
EUTSA_v10003625mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10003625mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10003625mg
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10003625mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
EUTSA_v10003625mg
Spliceosome [BR:
eus03041
]
Complex B
Other components
Prp19-related factors
EUTSA_v10003625mg
Complex C
EUTSA_v10003625mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
NRDE-2
Motif
Other DBs
NCBI-GeneID:
18011496
NCBI-ProteinID:
XP_006395029
UniProt:
V4K459
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MAISKDLYPSQEDLLYEEEILRNPFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERALVTMHKMPRIWVMYLQTLTVQQLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQEGIPIETSLRVYRRYLMYDPTHIEDFIEFL
VKSARWQEAAERLASVLNDDKFYSIKGKTKHTLWTELCELLVHHANVISGLNVDAIIRGG
IRKFKNDVGMLWTSLADYYIRKNLLEKARDIYEEGMMTVVTVSDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEDEIEENGVEEDYDDVRLNFSLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNPAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVILDKAVQVNYKNVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTKAVYEK
IMDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVNIFKYPHVKDIWVTYLTKFVKRYG
KTKLERARELFEHAVSKAPSDAVRTLYLQYAKLEEDYGLAKRAMNVYEEATKKVPDVQKF
EMYEIYISRAAEIFGVPKTREIYEQAIESGLPHKDVKLMCIKFAEVERSLGEIDRARTVY
KYASQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVTASYSQTHFILPENMMQK
DKMVDVEEAKDELKKAGLPEDQMAALERQLMAPTSTTDASKDGGRRVGFVSAGVISQSGE
NEGKPVTGNGEDIELPEESDDDESDGEDRVEIAQKEVPAAVFGGLSRKREEDGKEAAEGG
EKLGALERLKKQKLAQ
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggctatttccaaggatctttatccatctcaggaggatctcttatacgaggaggagatt
ctgcgtaatccatttagcttgaaactttggtggaggtatttgattgctaaagctgaatct
cctttcaaaaagcgattcattatctacgagagagctctaaaagctcttcctggaagctac
aagttgtggtacgcttatcttcgagaacgactcgatatcgtcaggaatctccctgttact
catccccagtatgattcactcaacaatacatttgagagagctctcgtcacgatgcacaag
atgcccaggatttgggtcatgtatcttcagactctcacggtgcagcaactgattactcga
acccggagaacttttgaccgtgcgctctgtgctctgcctgtgacgcagcatgataggatc
tgggagccttatcttgtctttgtgagccaggaaggtattccgattgagacctctcttagg
gtttatcgaaggtatctcatgtatgatcctactcatattgaggattttattgagtttctg
gtgaagtctgctcgctggcaagaagctgcagagcgattggcctctgtgctgaatgatgat
aagttctattctattaaagggaagaccaagcatacgctttggacggagttgtgcgagctt
cttgtgcaccatgctaatgttatttcgggtctcaatgttgatgctattatcaggggaggc
attaggaagttcaagaacgatgttgggatgctgtggacttctctggcggattactacatt
aggaagaatttgcttgagaaagccagggatatctatgaagagggtatgatgacagtggtt
actgtgagcgacttcagtgttatatttgatgtttattcaaggtttgaggaaagcactgtt
gccaaaaagatggagatgatgagttcaagtgatgaagaagatgagatcgaagagaatggc
gtagaggaggattatgatgatgtccgtctcaatttttctctgtcggtaaaagagctgcag
aggaagatactgaatgggttttggctgaacgatgataatgatgttgatctgagattggct
cgcttggaagaactgatgaacagaagacctgcacttgcaaacagcgtgctccttaggcaa
aatccgcacaatgttgaacaatggcatcgtagggtcaaaatttttgagggaaacccagca
aagcagattctcacatacacagaggcagtgaggactgtagatcctatgaaagcagttggg
aagcctcacacgttgtgggttgcttttgccaagttgtatgaaaaccataaagacctggtc
aatacaagagtgattttggacaaggcagtccaggtaaactacaaaaacgtggaccatctc
gccagtgtgtggtgtgagtgggctgagatggagttgaggcacaagaatttcaaaggagca
ttagagctgatgaggcgtgctactgctgtaccgacagtagaagtcagacggagagtcgct
gctgatgggaatgagccagtccagatgaagctgcatagatccttgaggctctggtccttt
tacgttgatttggaggaaagcctcgggacgctagaatcgacgaaagcagtctatgagaag
ataatggatttgaggatagctacgcctcaaattattttaaattatgcttttcttcttgag
gaaaacaagtactttgaagatgctttcaaggtgtatgaaagaggtgtcaacatattcaag
tatcctcatgtcaaagacatatgggtaacttatcttacaaagtttgttaagagatatggg
aagacaaagctggagcgggcgagagagttgtttgagcatgcagtttcaaaggctccatct
gatgctgttaggaccttgtaccttcagtatgctaagctagaagaggattatggtctggcc
aagcgagccatgaatgtttatgaggaagccaccaaaaaggttccagatgtccagaagttt
gagatgtatgagatatacatttcccgtgcagcagagatattcggtgttcccaaaactagg
gagatatatgagcaagcaatagagtctggacttccacacaaggatgtgaagctcatgtgc
ataaaatttgcagaggtggagagaagcttgggagaaattgatcgtgctcgtacagtctac
aagtatgcctcacagttcgctgacccaaggtccgaccctgagttttggaacaaatggcat
gaattcgaggttcagcatggaaatgaagacacctacagagaaatgcttcggatcaagcgt
agcgttaccgcaagctacagtcagactcatttcattctaccagagaacatgatgcaaaag
gacaagatggtagacgtggaggaggcgaaagatgagctgaagaaagcaggtttgccagaa
gatcaaatggcagctttggagaggcagctcatggctccaacgtcgaccacagatgcgtca
aaagatggtggaagaagagttgggtttgtgagcgcaggagtcatttcacagtcgggtgag
aatgaagggaaaccagtgacagggaacggagaagatatcgagcttccagaagagagtgac
gatgatgagtctgatggagaagacagagtagagatcgctcagaaagaagtccctgctgct
gtgtttggaggactctcgagaaagagagaggaagacggcaaagaagctgcggaaggcggt
gagaaactgggtgcgttggagaggttaaagaaacagaaactagctcagtga
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