KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10005618mg
Entry
EUTSA_v10005618mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12828  splicing factor 3B subunit 1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10005618mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10005618mg
   03036 Chromosome and associated proteins [BR:eus03036]
    EUTSA_v10005618mg
Spliceosome [BR:eus03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    EUTSA_v10005618mg
 Complex B
    EUTSA_v10005618mg
 Complex C
   U2 SnRNP specific factors
    EUTSA_v10005618mg
Chromosome and associated proteins [BR:eus03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    EUTSA_v10005618mg
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT HEAT_EZ HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 HEAT_ECM29 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 18011831
NCBI-ProteinID: XP_006394172
UniProt: V4KVQ6
LinkDB
Position
Unknown
AA seq 1260 aa
MADLDPEIAKIQEERRKMEADLASLTSLNFDRDLYGDNDRDSYLTSIAPNDEEDPNLDTT
GSLVAQRLASYTAPRSILNDVARAHSEDDDGGFKPRQTIAEREGDYRNRRLNRVLSPDRV
DPFSMGEKTPDPSVRTYTDHMRETALQREREETMRLIAKKKKEEEEAAKGQKDSAPPPPS
SSSSSSSRRRQRWDLSEEDGAAAKKSKSSTSDWDLPDAAPGIGRWDATPGRVSDATPSVG
RRNRWDETPTPGRVTDSDATPGGGVTPGATPSGVTWDATPKGLATPTPKRQRSRWDETPA
TMGSATPMGGVTPAGAYTPGVTPVGGIDMATPTPGQLNLRGVMTPEQYNLQRWERDIEER
NRPLSDEELDAMFPTEGYKVLDPPASYVPIRTPAKKAVGTPTPMATPGYIIPEEVRGQQY
DVPPEVPGGLPFMKPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPAQRKT
ALRQLTDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPFVHKV
LVVIEPLLIDEDYYARVEAGLATMIAAMRPDIDNMDEYVRNTTARAFSVVASALGIPALL
PFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKVRTIT
ALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYASYY
TKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVESDYIRSDILPEFFKHFWVRRMAL
EKRNYKQLVETTVEIANKVGVADIVGKVVENLKDESEPYRRMVMETIDKVITNLGASDID
ARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNGLGQRVKPYLPQICGTIKWRLNNKS
AKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI
GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLE
MLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS
PFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH
RQTAASAVKHMALGVAGLGCEDALVHLLNYIWPNIFETSPHVINAVMEAIEGMRVALGAA
VILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQTNVYSRPELTMFV
NT seq 3783 nt   +upstreamnt  +downstreamnt
atggcggatctagatccagagatcgccaaaattcaagaggagagacggaagatggaagca
gacctcgcttctctcacttctttaaatttcgatcgcgatctgtacggagataacgaccgt
gattcctacttgacatctatagcacccaacgatgaggaggatccgaatctggacaccact
ggttcgctcgtggctcagcgtcttgcttcttacaccgctcctaggtcgattctcaatgac
gtagctcgtgctcacagcgaagatgacgatggcggattcaagcctaggcagactattgcg
gaacgcgagggtgattataggaacaggagactcaatcgagttctctctccggatagagtt
gaccctttttctatgggcgagaagacgccggatccgagtgttcggacttacacggaccat
atgagggagacggctttgcagagggagagagaggaaactatgaggctcatcgctaagaaa
aagaaagaggaagaagaagctgcaaagggacagaaagattctgctcctcctcctccttct
tcttcatcttcttcttcttccaggaggagacagaggtgggacctctccgaagaggacggt
gctgctgcaaagaagtctaaatcgtcaacttcggattgggatttacctgatgcagctcca
gggattgggcggtgggatgcaactccagggagagtttctgatgcaacaccatctgttgga
cgaaggaacaggtgggacgaaactcctacacctggtcgtgttactgattctgatgcaaca
ccaggtggtggtgttactcccggtgcaaccccttcaggcgttacatgggacgcgactccg
aaagggcttgcaacgcctaccccaaagcgtcaacgttcaaggtgggacgagacaccagcc
actatgggaagtgctacacctatgggcggagtgactcctgctggtgcttacactcctggt
gtcactccagtcggtgggatcgatatggctacaccaactccgggccagcttaatctgcgt
ggtgttatgacccctgagcagtacaatttgcagaggtgggagagggatatcgaagagaga
aacagaccattgagtgatgaagagcttgatgccatgtttcctaccgaagggtacaaggtt
ttggatccgcctgcttcttatgttcccatccggacgcctgctaagaaggctgtaggaacc
ccgacacctatggctactccgggctacattattccggaggaagtccgtgggcagcagtat
gatgtgcccccggaagttcctggtgggttgccgtttatgaaacctgaggattatcagtac
ttcggagctctgttgaatgaggagaacgaagaagagctgtctcctgacgagcagaaagaa
cgcaagataatgaaactgttgttgaaggttaaaaatggaactcctgcccagaggaaaaca
gctttaaggcagcttacagataaggcccgtgagcttggtgctggtcccttgtttaataaa
attttgccattgctcatgcaacccactctggaagatcaagagaggcatcttttggtgaaa
gtaatcgataggattctgtacaaacttgatgagctggtaaggcctttcgtccacaaggtt
cttgttgttattgagcctctgttgattgatgaagattattatgctcgtgtagaagctggt
ttagccactatgattgcagctatgcggcctgatattgacaacatggatgaatatgtgagg
aacacaacagcaagagcgttcagtgtggtggcttcagctcttgggatccctgcactcttg
ccgttcctgaaagccgtttgccagagtaagaagtcatggcaggcacggcacactggaatt
aagattgttcagcagattgccatactaattggctgtgccgtcctgcctcacttaaggtct
ctagtagagatcatcgaacatggtctcagtgatgaaaaccagaaggttaggactattacc
gccttgtcactggctgctcttgccgaggctgctgctccttatggtattgagagctttgac
tcagttctgaagcctctgtggaaaggtatcaggtctcaccgcggtaaagttttggctgcg
tttttgaaggcgattggttttatcatccccttgatggatgctatttatgcgagctactat
acaaaagaagtgatggttatcttgatccgcgagttccagtctcctgatgaagagatgaag
aagattgtcctcaaggtggtgaaacagtgtgtcagtacagaaggagttgagtcggattac
attcgcagtgatattttgcctgagttcttcaagcatttctgggttaggagaatggctctg
gagaagagaaactataagcagcttgttgaaactactgtggagattgcgaacaaggtcggt
gttgcggatattgtgggaaaggtggtcgaaaatcttaaagatgagagtgaaccgtaccgg
cgtatggttatggaaaccattgacaaagttatcacaaacttgggagcatctgatattgat
gccagattggaggaactgctcattgatggcattctctatgctttccaagaacagacaagc
gatgatgctaatgtgatgcttaatggatttggtgctgtagtgaatggtcttggtcagcgt
gtaaagccgtatcttcctcagatttgtggtaccatcaagtggcgactaaacaacaagagt
gcaaaggtaagacaacaagctgctgatcttatttctagaattgctgttgtcatgaagcag
tgtggagaggaacagttgatgggacatctcggtgttgtcttgtatgagtatcttggagaa
gagtaccctgaagtcttgggatcaattcttggagctttaaaagctatcgtcaacgtgatt
ggtatgacaaagatgactcctcccattaaggatctgcttccaagattgaccccaattttg
aagaacaggcacgagaaagtgcaagagaattgtatcgaccttgttggtaggattgctgat
cgtggtgctgagtttgttccggctagggagtggatgagaatttgtttcgagcttcttgaa
atgcttaaagcgcataaaaaaggtatccgccgtgccacagtcaacactttcgggtacatt
gccaaagccatcggaccacaagacgttctagccactttactgaacaatctcaaagtccaa
gaacgtcagaaccgtgtttgcaccacagttgcaatcgccatagtcgccgaaacatgctct
cccttcactgttttacccgctttgatgaacgagtaccgtgttccagagctcaacgtccaa
aacggtgtattgaagtctctctctttcctgttcgaatacattggagaaatgggcaaagat
tacatatacgcagtgacaccgttgctggaagacgcgctcatggacagagatttggttcac
agacaaaccgcagcttcagccgtgaaacacatggcattaggtgtagctggtttgggttgt
gaagacgctttggttcacttgcttaactacatctggcccaacattttcgagacatctcct
cacgtcatcaacgctgtgatggaagccattgaaggaatgagagttgcattaggtgcagcc
gttattctaaactattgtttgcagggcttgtttcatccggcgcgcaaggtccgtgaagtg
tactggaagatctacaattcgctatacattggtgcccaggacacgctagttgctgcttac
ccggtccttgaggatgagcagacaaatgtttatagccgacctgagttaaccatgtttgta
tga

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