Eutrema salsugineum (saltwater cress): EUTSA_v10005810mg
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Entry
EUTSA_v10005810mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10005810mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10005810mg
03009 Ribosome biogenesis [BR:
eus03009
]
EUTSA_v10005810mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10005810mg
Spliceosome [BR:
eus03041
]
Complex A
U2 snRNP components
U2 related factors
EUTSA_v10005810mg
Complex B
EUTSA_v10005810mg
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
EUTSA_v10005810mg
Ribosome biogenesis [BR:
eus03009
]
Eukaryotic type
90S particles
Helicases
EUTSA_v10005810mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
T2SSE
Cas3-like_C_2
SRP54
nSTAND_NTPase5
AAA_7
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
18020164
NCBI-ProteinID:
XP_006402386
UniProt:
V4LJB6
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVMDDPSVPAKNVKANGLADVHSLINKWNGKPYSPKYYEILEKRRTLP
VWLQKEEFLRTLKDNQTLILVGETGSGKTTQIPQFVIDAVDAETPDKRRKWLVGCTQPRR
VAAMSVSRRVADEMDVAIGEEVGYSIRFEDCSGPRTVLKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGNL
GDQVGPVKAVPLYSTLPPAMQQKIFDPAPEPLTEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAFKQNNEDPNWCYENFINSRAMKSADNVRQQLVRIMSRFNLKM
CSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGNYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPNCEAKRVLEKLYKKREREKEESK
NRK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccgaaaggaagaggaaagttagtttgttcgatgtcatggacgatccatcggtt
ccggcgaagaatgtcaaagccaatggtctcgccgacgtccacagtctcatcaataagtgg
aacggaaagccgtattcgcccaaatactatgaaatcctggagaagcggaggactttacct
gtctggcttcaaaaagaggagtttctcagaactctaaaggacaatcaaaccctaattctg
gttggtgagaccgggagtggtaaaactacccagattccacagtttgttatagatgctgtg
gatgctgaaaccccggataagcgtaggaagtggttggtcggatgtacacagcctcgtaga
gttgcagccatgtctgtttccaggcgtgttgctgatgagatggatgtggctattggggaa
gaagttggttacagcatccgtttcgaggattgcagtggccccagaacggtgcttaagtat
ttgactgatggtatgctgctgagagaagccatggcggatcctcttttagagagatacaaa
gtgattattctcgatgaggctcacgaaagaactctagccacggatgtgctctttggtctt
cttaaagaggtgttgagaaataggcctgatcttaagttagttgtgatgagtgcaactcta
gaagctgaaaagtttcaggaatattttagcggtgcgcctctgatgaaagttcctggtagg
cttcatcccgttgagatcttctacactcaggagcctgagagggattatcttgaagctgct
attaggactgttgtccagatacacatgtgtgagccacctggggatattcttgttttctta
actggagaggaggagattgaagatgcatgccgcaaaatcaacaaggaggttggtaatctt
ggggatcaagtcgggcctgtgaaagctgtaccattgtattccactctcccacctgcgatg
cagcagaagatatttgatcctgctccagagccgttaacagagggtggtcctcctgggcga
aagattgttgtctcaaccaatattgctgagacttctttaaccatcgatgggattgtgtac
gtcatcgaccctggttttgcgaagcaaaaagtctacaacccacgaatccgtgttgagtcg
ttgttggtgtccccaatatcaaaggctagtgctcaccagagatcaggtcgtgccggtaga
acacggcctggaaaatgtttcaggctttatacagagaaaagtttcaataatgacttgcag
ccgcagacgtatcctgaaatattgagatcaaaccttgccaacacagttctgaccttgaag
aaactgggtatagatgacttggtgcacttcgattttatggacccccctgctccggagaca
ctgatgcgagccttggaggttttaaattatttgggagcacttgatgatgaaggtaacttg
acaaagacaggtgagataatgagtgagttccccttggatccgcagatggcgaagatgctc
atagtcagtcctgaattcaactgctcgaatgagatactctcggtgtcggcaatgctctca
gtaccgaattgctttatccggcctagagaggctcaaaaagcagcagatgaagcaaaagct
aggtttggacacattgatggagatcacctcacgctgctaaacgtctaccacgcttttaag
caaaacaatgaagacccaaactggtgctacgaaaacttcatcaacagtagagccatgaaa
tctgcagacaatgttagacagcagctagtgaggataatgtcgagatttaatttgaagatg
tgcagcacggatttcaatagccgcgactactacatcaacataagaaaggccatgcttgcc
ggttatttcatgcaagtggctcacctcgaacgcactggcaattacttgaccgtcaaagat
aaccaagtggttcatttgcatccatccaattgcttggatcacaaacctgagtgggtaatc
tacaacgaatatgttttgactagccggaatttcatcagaactgtgaccgatattcgcggt
gaatggctggtagatgttgctcctcattattacgatctttccaactttcccaactgcgag
gcgaaacgtgtcctcgagaagctttacaagaagagagagagggagaaggaagagagcaag
aaccgcaagtga
DBGET
integrated database retrieval system
