Eutrema salsugineum (saltwater cress): EUTSA_v10005848mg
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Entry
EUTSA_v10005848mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10005848mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10005848mg
Enzymes [BR:
eus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
EUTSA_v10005848mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EUTSA_v10005848mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10005848mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
Motif
Other DBs
NCBI-GeneID:
18020262
NCBI-ProteinID:
XP_006402771
UniProt:
V4LKG5
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKTAATDDVPESAPLEGYFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRRALVAKSYHCSPKCFTDAWQHHRTLHERAAAENGNEE
DELVRFNSTGSGVLAGSLSGSMSNLNLTNNGPTPFYPSNVTQKNGGETLIEVGCCKTYTP
TADDIGYVLKFECVVANAETKQFVGHPSTILTSRVIPAPSPSPRKLIPVNGADVMGHLDH
DGRIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQ
EVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFTHVKKYDVE
FNKAAQSLTEALIPPAQKRTALNRLVKDNIALIVVLEAKFGNQPADPSGKRQLVCVANTH
VNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHSLLVMGKVDAMH
PDLLVDPLGILRPHTKLTHQLPLVSAYSSFVRMGIVLGLEQHRRRMDLNTNEPLFTNCTR
DFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCKPRTRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgatccgagtgcatctaccttccgaaattcccattgtaggctgtgaatta
acgccttacgtgcttgttcgccgtccggacaagaccgccgccactgacgatgtgcctgaa
tcggctcctctcgaaggttactttttgagatacagatggtatcgtgtacagagcgataag
aaagtaacgatttgcagtgtgcatccaacggaacaagccaccttgcaatgcgtattctgt
tcaaagcgtagagcccttgttgcaaaaagctaccactgttctccaaaatgctttacagat
gcgtggcagcatcacaggactttgcacgagcgagcagccgccgagaacggaaacgaggaa
gatgagttagtccggttcaacagcactggctctggtgttcttgccggtagcttgtccggg
tctatgtcaaatctcaatcttaccaacaatggcccaacgccgttttatccttctaatgtc
acgcagaaaaatggaggagagacgctaatcgaggtcgggtgttgcaaaacttacacgcca
acagctgatgatattggctatgttttgaagttcgagtgtgttgtggctaacgcagagacg
aaacagtttgtgggacaccctagtaccattttgacttcacgtgttattcctgctccttct
ccaagtccccgtaagcttatccctgtcaatggagctgatgtgatgggtcacttagatcat
gatggtcggattcagtctgcaggatcattcactgttctttcctataatattttgtctgat
acttctgcaagtagtgacctttacagttactgccctccttgggctctttcttggccatac
cgcagacagaatttattaagggagattgttggttatcgtgctgatgtagtttgccttcag
gaggtacaaagtgatcatttccatgaaatttttgctcctgagttggataagcatggatat
caagctctctacaagaggaaaactaatgaggttctcagcggaagtacaagtgcgattgac
gggtgtgcaacatttttccgacgggatagatttacacacgtcaagaaatatgatgttgaa
ttcaataaggctgctcagtctttgactgaggctctaatccctcctgcgcagaagagaact
gctttaaaccgactagttaaggataacattgccctgatagttgttcttgaagcaaagttt
ggtaatcaacctgctgatccttctggaaagcgccagcttgtttgtgtggctaacacgcat
gttaatgttcaacaagaactcaaggacgtgaagctctggcaagttcataccttattaaag
gggctggagaaaatagctgctagtgccgatattcctatgcttgtgtgtggagacttcaat
acgcttcccgggagtgcccctcattcacttcttgtaatgggaaaggtggatgcaatgcac
ccagatctgttggttgatccccttggaatcctgcgtcctcataccaaattgactcatcaa
ttgcctctggtgagcgcatactcgtcgtttgtgagaatgggaatcgttcttggattggaa
caacacagaagaagaatggatcttaacacaaacgagcctttgtttaccaattgcacaagg
gacttcattggcactcatgactacatattttacacagcggatacgttaatggtggaatca
ttattggaattgctggatgaagatggattgagaaaggatacagctcttccttccccggaa
tggtcttctaatcacattgcactcttagctgaatttcgatgcaagcctaggaccagacgc
taa
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