Eutrema salsugineum (saltwater cress): EUTSA_v10005922mg
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Entry
EUTSA_v10005922mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10005922mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10005922mg
03036 Chromosome and associated proteins [BR:
eus03036
]
EUTSA_v10005922mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUTSA_v10005922mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
EUTSA_v10005922mg
mRNA degradation factors
5'-3' decay
Decapping complex
EUTSA_v10005922mg
Chromosome and associated proteins [BR:
eus03036
]
Eukaryotic type
Gene silencing
piRNA pathway
EUTSA_v10005922mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18019737
NCBI-ProteinID:
XP_006402503
UniProt:
V4ND70
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MNNRGRYPPGLGTGRGAAPNPDYQSYRQQPQAQHHVQRGQPQNPQQFQLQQQQQQQWSRR
AQLPGNANEVQKTSQPVATSDPNGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKR
DLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPKNNVI
QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI
LDLTKKGVCVLKDCTMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKA
FKDRHLRKPYVINLMDQLTLMGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR
VELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVV
INFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDQ
AIYCQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagaggaagatatccacctggacttggaacgggtcgtggagcggcgccgaat
cccgattatcagtcgtatcggcagcaacctcaagctcagcatcacgttcaacgcggtcaa
ccgcagaaccctcagcagtttcagctgcagcaacagcagcaacaacaatggtcaagacgc
gctcagcttcctggaaacgccaatgaggtccagaagacgtctcagcccgtagctaccagc
gatcctaatggccaggattggaaggcaacgttaaggctcccacctcccgatactcgttat
cagacagcggatgtgacagctacaaaaggaaatgaattcgaagattactttctgaaaaga
gatctgctcaagggaatttatgaaaagggttttgaaaagccatctcctattcaagaagag
agcattccaattgctttaactggtagtgatattcttgctagagccaaaaacggcactgga
aagactggagccttctgcattcccgtcctcgagaaaatcgatccaaagaacaatgttatt
caagccatgattctagtcccaacacgagagctggccctacagacatcacaggtttgcaag
gagctttctaaatatctgaatatccaagttatggtcaccactggcggtaccagtctgaga
gatgatatcatgcgattacaccaacctgtacatctgctggttggaactcctggaagaata
ttggatcttacaaaaaagggagtgtgtgttttgaaagactgtacaatgcttgtaatggat
gaggccgacaagcttttgtctgcagaattccaaccttctctagaggaattgatacagttt
ctgccacaaaatcgtcaatttttgatgttttccgctacatttcctgtaactgtgaaggct
tttaaggatcgacatctccggaagccctacgttatcaatctcatggatcaactcacgctt
atgggtatcacgcagttttacgcttttgtcgaagagagacagaaggttcactgcctcaac
acacttttctctaagctgcaaatcaaccaatcgataatcttttgcaactctgtcaatcgc
gtggaactgttggctaagaaaattacagaacttggttattcatgcttctacattcatgcg
aagatggttcaagatcataggaacagagtgttccatgagttccgcaatggtgcttgcaga
aatctcgtttgcactgatctgttcactcgtggaattgacattcaagctgtgaatgtagtg
attaactttgattttcctaggacttccgaatcatacctacacagggtgggtcgatcagga
cggtttggacaccttgggttggctgtgaatttggtaacatatgaggaccgtttcaaaatg
tatcagactgagcaagaacttggcactgaaatcaaaccaattccttctcttatcgatcaa
gcaatctactgccagtaa
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