Eutrema salsugineum (saltwater cress): EUTSA_v10006086mg
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Entry
EUTSA_v10006086mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12857
Prp8 binding protein
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10006086mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10006086mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
EUTSA_v10006086mg
Complex C
U5 SnRNP specific factors
EUTSA_v10006086mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_NWD2_C
Beta-prop_IP5PC_F
Beta-prop_Nup120_160
Nbas_N
RMC1_N
Motif
Other DBs
NCBI-GeneID:
18020220
NCBI-ProteinID:
XP_006402660
UniProt:
V4LW52
LinkDB
All DBs
Position
Unknown
AA seq
336 aa
AA seq
DB search
MDIVKRENEPMEWSTVPYGAPQGPGSNGKQRTSSLEAPIMLLSGHQSAIYTMKFNPAGTV
IASGSHDREIFLWRVHGDCKNFMVLKGHKNAVLDLHWTSDGSQIVSASPDKTVRAWDVET
GKQVKKMAEHSSFVNSCCPSRRGVPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS
FSDAADKIFTGGVDNDVKVWDLRKGEVIMTLEGHQDTITGMSLSPDGSYLLTNAMDSKLF
VWDMRPYAPQNRGVKIFEGHQHNFEKNLLKCAWSPDGSKVTAGSADRMVHIWDTASRRIL
YKLPGHNGSVNESVFHPHEPIIGSCGGDKQIYLGEI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggatattgtcaaaagagagaatgagccaatggaatggtcaacagtcccctacggtgct
cctcaaggacctggctccaatggcaagcaacggacgtcaagcttagaagcgcctataatg
ttgctaagtggacaccaaagtgctatctacaccatgaaattcaaccctgccggaaccgtg
atcgcctctggatctcacgacagagaaatcttcctctggagagttcacggagactgcaaa
aactttatggttttgaaaggtcacaagaacgctgtcctcgaccttcactggacaagtgat
ggctcccagattgtatcagccagtccagacaaaaccgttagagcctgggatgtcgaaaca
ggtaaacaagtcaagaaaatggctgaacactcgtcatttgtgaattcttgctgtccttcc
cgtcgaggagtgcctcttatcgtaagtggatctgatgatggaactgcaaagctttgggac
atgcgtcaaagaggagccatacaaacattccctgataaataccaaatcacggccgtgagt
ttctctgatgcagccgataagatattcactggcggtgtggacaacgatgttaaagtatgg
gacttgaggaaaggcgaagtgatcatgacccttgaaggccatcaagatacgataacaggt
atgagcctaagtccagacggatcttaccttctgactaatgccatggacagtaagctcttt
gtatgggatatgcgtccttacgctccacagaatcgaggtgtgaagatctttgaagggcat
caacacaactttgagaagaacttgttgaaatgtgcttggtcaccagatggtagtaaagtc
acagcaggtagtgcggatcgaatggttcatatatgggacacggcgtctaggcggattctg
tataagctccctggtcacaatggatccgtcaatgagtctgttttccatcctcacgaacca
atcattggatcttgcggtggtgataaacagatttatctaggtgagatctga
DBGET
integrated database retrieval system