KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006086mg
Entry
EUTSA_v10006086mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12857  Prp8 binding protein
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10006086mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10006086mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    EUTSA_v10006086mg
 Complex C
   U5 SnRNP specific factors
    EUTSA_v10006086mg
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_NWD2_C Beta-prop_IP5PC_F Beta-prop_Nup120_160 Nbas_N RMC1_N
Other DBs
NCBI-GeneID: 18020220
NCBI-ProteinID: XP_006402660
UniProt: V4LW52
LinkDB
Position
Unknown
AA seq 336 aa
MDIVKRENEPMEWSTVPYGAPQGPGSNGKQRTSSLEAPIMLLSGHQSAIYTMKFNPAGTV
IASGSHDREIFLWRVHGDCKNFMVLKGHKNAVLDLHWTSDGSQIVSASPDKTVRAWDVET
GKQVKKMAEHSSFVNSCCPSRRGVPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS
FSDAADKIFTGGVDNDVKVWDLRKGEVIMTLEGHQDTITGMSLSPDGSYLLTNAMDSKLF
VWDMRPYAPQNRGVKIFEGHQHNFEKNLLKCAWSPDGSKVTAGSADRMVHIWDTASRRIL
YKLPGHNGSVNESVFHPHEPIIGSCGGDKQIYLGEI
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggatattgtcaaaagagagaatgagccaatggaatggtcaacagtcccctacggtgct
cctcaaggacctggctccaatggcaagcaacggacgtcaagcttagaagcgcctataatg
ttgctaagtggacaccaaagtgctatctacaccatgaaattcaaccctgccggaaccgtg
atcgcctctggatctcacgacagagaaatcttcctctggagagttcacggagactgcaaa
aactttatggttttgaaaggtcacaagaacgctgtcctcgaccttcactggacaagtgat
ggctcccagattgtatcagccagtccagacaaaaccgttagagcctgggatgtcgaaaca
ggtaaacaagtcaagaaaatggctgaacactcgtcatttgtgaattcttgctgtccttcc
cgtcgaggagtgcctcttatcgtaagtggatctgatgatggaactgcaaagctttgggac
atgcgtcaaagaggagccatacaaacattccctgataaataccaaatcacggccgtgagt
ttctctgatgcagccgataagatattcactggcggtgtggacaacgatgttaaagtatgg
gacttgaggaaaggcgaagtgatcatgacccttgaaggccatcaagatacgataacaggt
atgagcctaagtccagacggatcttaccttctgactaatgccatggacagtaagctcttt
gtatgggatatgcgtccttacgctccacagaatcgaggtgtgaagatctttgaagggcat
caacacaactttgagaagaacttgttgaaatgtgcttggtcaccagatggtagtaaagtc
acagcaggtagtgcggatcgaatggttcatatatgggacacggcgtctaggcggattctg
tataagctccctggtcacaatggatccgtcaatgagtctgttttccatcctcacgaacca
atcattggatcttgcggtggtgataaacagatttatctaggtgagatctga

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