Eutrema salsugineum (saltwater cress): EUTSA_v10006525mg
Help
Entry
EUTSA_v10006525mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10006525mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10006525mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10006525mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
EUTSA_v10006525mg
Complex C
U5 SnRNP specific factors
EUTSA_v10006525mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
DUF1493
Motif
Other DBs
NCBI-GeneID:
18992838
NCBI-ProteinID:
XP_006416344
UniProt:
V4KXA6
LinkDB
All DBs
Position
Unknown
AA seq
2160 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPNSFGDRVA
KGRPQELEDRLKKSKKKERDVVDDTVSNRQSKRRRLREESVLTDTDDVVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNETVKNIEKKIEIEKLLNPISNQDFDQL
VSIGKLITDFQEGGDSGGGKASEDEGLDDDLGVAVEFEENEEDDEESDPDMVQEEDDEED
EEPQRTGSMQVGAGINDEDAGDANEGTSLNVQDIDAYWLQRKISQAYEQQIDPQHCQVLA
EELLKILAEGDDRDVENKLLVHLQFEKFSLVKFLLRNRFKVVWCTRLARAEDQEEKNRIE
DEMRGLGPELAAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDVADK
DLESGWLKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHAKGYDEVHVPWVSKKVD
INEKLVKITEMPVWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLT
ILQQLEMNRNPDGTYNHGDYKIVYVAPMKALVAEVVSNLSNRLKDYGVTVRELSGDQSLS
GKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTL
RQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKK
PLQRFQLMNDICYQKVLAGAGKHQVLIFVHSRKETAKTANAIKDTAMANDTLSRFLKEDS
VSREVLQSQIDIIKNSDLKKLLPYGFAIHHAGLTRGDREIVESLFAEGHVQVLVSTATLA
WGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQSGEGIIITGYSEL
QYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLY
GLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHG
TIATFNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPS
AKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSK
MVGKRMWSVQTPLRQFHGIPNDILMKLEKKDLVWERYYDLSSQELGELIRSPKMGRPLHK
FIHQFPKVNLAAHVQPITRTVLKVELTITPDFQWDEKIHKYVEPFWIIVEDNDGEKILSS
RDHTISFTVSIFEPLPPQYFIRVISDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPL
PVTALRNPDYERLYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILKNH
QEGSDATMRVVYIAPLEAIAKEQFRIWERKFGKGLGLRVVELTGETTLDLKLLEKGQIII
STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGHGGTVLEVIVSRMRYISSQGDNKIR
IVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPT
YTAIVQHAKNNKPAIVFVPTRKHVRLTAVDLMAYSHMDNSQSPDFLLGKLEELEPFVSQI
REETLKETLRHGVGYLHEGLCSMDQEIVTQLFEAGRIQACVMSSSLCWGTPLTAHLVVVM
GTQYYDGRENSHSDYPVSDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPV
ESHLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRHLSDH
LSELVENTLSDLEASKCIEIEDEMDLSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKG
LVEILTSASEYDTIPIRPGEEDAVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQSI
SGNLAMDQREVLLSATRLLQAIVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLP
HFTKDLAKRCQENPGKSIETVFDLVEMEDEERQELLKMKDSELLDIARFCNRFPNIDLTY
EVVGSEEVTPGKEVTLQVMLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVGDTETNQLLA
IKRVSLQRKLKVKLDFAVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKESGAGDHMEE
NT seq
6483 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttgggaggcggtgcggaagcgcatgccaggttcaagcagtatgagtacaga
gccaattctagtctggtgctaaccactgacaatcgtcctcgcgacacgcatgaacccaca
ggagagccggaaactctatggggtaaaattgatcccaattcctttggagaccgcgttgcc
aagggaaggcctcaggagctggaggataggcttaaaaagtcgaagaagaaggaacgtgat
gttgtggatgacacggtttctaatcggcagagcaagaggcgtcgccttagagaagagagt
gtgctcacagatacggatgatgtggtttatcagcccaagactaaggagacaagggctgct
tacgaggccatgctcagtcttattcagcagcagttgggtgggcaacctctgaatattgtt
agtggtgcggcagatgagatcttggctgttctcaagaacgaaacagtaaaaaacattgaa
aagaagatcgagatcgagaagttgctgaaccctatttctaatcaggattttgatcagctt
gtttccattgggaaattgatcactgactttcaagagggtggggattctggtggtggtaaa
gcgagtgaggatgaagggcttgatgatgacctcggtgtggctgttgaatttgaggagaat
gaagaagacgatgaggagagtgatcccgatatggtccaggaggaagacgacgaggaggat
gaggaacctcagagaactggaagtatgcaggtgggtgcagggataaatgacgaggatgca
ggagatgcgaatgagggcacgagtctgaacgttcaggacattgatgcctattggctccag
agaaagatatcccaagcttatgaacagcagattgatccacaacactgccaggtgctcgca
gaagagctgcttaagatactcgctgaaggggatgatagggatgtggagaacaagctactt
gtgcaccttcagtttgaaaagtttagccttgttaaatttctgctgcggaaccgctttaaa
gttgtgtggtgcacccgtttggctagggcagaagaccaggaagagaagaatcgaattgaa
gacgagatgaggggtttgggcccagagttggcggcaattgtggagcagttgcatgccaca
agagcgacagccaaagagagggaggagaaccttcagaaaagtattaatgaagaagcccgg
cgtttgaaggacgaaactggtggagatggaggcagaggcaggagagatgttgctgataaa
gatttagagagtggttggttgaagggtcagcgtcagatgctggacctggagagcttggcc
tttgaccaaggtggtctcctgatggcgaataagaagtgtgaccttcccccgggctcttac
agaagtcatgccaagggatatgatgaagttcatgtgccatgggtttctaaaaaggtggat
atcaatgagaagcttgtgaagatcaccgagatgccagtttgggctcaaccggcttttaag
ggaatgcaacaattgaacagggttcagagcaaagtgtatgacactgcgctgtttaaggca
gagaacattcttctttgtgctccaactggtgctggaaaaaccaatgttgctatgctcacc
attctgcagcaacttgaaatgaacaggaacccagatggaacatataatcatggagattac
aaaattgtctatgttgcacccatgaaagcgcttgttgctgaggtcgtcagtaatttgtct
aatcgtctgaaggattatggagttactgtgagggaactcagtggggatcagtcccttagt
gggaaagaaattgaggagactcagataattgttacaactccagaaaagtgggatatcatt
actaggaagtctggggatcgcacttatactcagcttgtgagacttcttataatcgatgaa
attcatcttcttcatgataatcgagggcctgtgcttgaaagcattgtcgctaggactctt
aggcagattgaaaccacgaaggaaaatattcgtctggtgggtttatcggctacactgcca
aattacgaagatgtggccttatttttgcgggttgatcttaagaaagggttgtttaaattt
gaccgcagctacagacccgtacctctccatcagcagtatattggaatcagtgtgaaaaaa
ccgttgcaaaggttccagttgatgaatgatatatgttatcagaaagtattggctggtgct
ggaaagcaccaggtccttatttttgttcattcgaggaaggaaacagcaaaaactgcaaac
gcaataaaggacaccgcaatggcgaacgataccctcagcagattcttgaaggaagatagt
gtaagtcgtgaagtacttcagagtcagattgacattattaagaacagtgacctgaaaaag
cttctgccttacggttttgctattcatcatgctgggttaacaaggggtgatcgtgagata
gttgagtcgctttttgctgaaggacatgtgcaagtcttggtttccacagcaacccttgca
tggggtgtgaatttgcctgcacatactgtcattatcaaaggaacccaggtctataatcct
gagaaaggggcttggatggaactgagtcctctggatgttatgcagatgcttggtcgtgct
ggaagacctcagtatgatcaaagtggggagggtataattatcactggctacagcgagctg
cagtattatctttctttgatgaatgagcaactacccattgaaagccagtttatttccaaa
cttgctgatcagcttaatgctgaaattgtgcttggaaccgttcagaatgctagagaggct
tgccattggcttggctatacatatttatatatccgtatggttcgtaatccaacgctctat
ggcttagcgcctgatgcccttgcaaaagacgtagtattggaggagagaagagctgacctg
atacattcggctgctactatcttggacaaaaacaacttggttaagtatgacagaaaaagt
ggatacttccaagttactgatttgggacgcattgctagctactactacataacccatggg
accatagctacattcaatgagcatttgaagccaacgatgggtgatatagatctttatcga
ctattttcactgagtgaggagttcaagtatgtgactgttcggcaagatgagaagatggaa
ctggcaaaacttttggatcgtgtaccgattccgatcaaggaaactctggaggagcccagt
gcaaagattaatgttttgctacaggcttatatttcacagctaaagcttgagggcctttct
ttgacatcagacatggtttatataactcagagtgctggacgtcttgtacgagctctctat
gaaattgtattgaagcggggatgggctcaactggctgagaaagctctgaacttgtctaaa
atggttgggaagaggatgtggagtgtccagacaccccttcgtcagtttcatggaattccc
aatgatattctgatgaagttggagaagaaggatttggtgtgggagaggtactatgatcta
tcctcacaggagctaggagagcttattcgtagtcctaagatgggcagaccgcttcacaag
ttcatccaccagttcccaaaagtgaatcttgcagcacatgttcagcctatcactcgaact
gttctgaaggtggagctaacaattacacctgattttcagtgggacgaaaaaattcataaa
tatgttgagccgttttggataattgtggaagacaatgatggtgagaagatcctttcatca
cgagatcacactataagcttcactgtgtcaatctttgaaccgttgccacctcagtatttt
atccgagtgatttcagacaagtggcttggctcgcagactgtgttgcctgtatctttcaga
catcttattcttccagagaagtacccaccaccaaccgagttacttgacttgcagcccctc
ccagtcacggcgttaaggaatccagattatgagagactctatcaggatttcaagcatttc
aatccggtgcagacgcaggtctttactgttttgtataacacgaacgacaatgtgttggtt
gctgctccaacgggtagtgggaagactatatgtgcagagtttgctatactgaaaaatcat
caagaaggatctgatgctacaatgcgtgttgtctatattgcaccgcttgaggctattgct
aaggagcagtttcgtatctgggagagaaagtttgggaagggtcttggtttacgggttgtt
gagctaaccggggagacaacgttggatcttaaactgcttgagaaaggtcagataatcata
agtactccagagaaatgggacgcgctttcccgcagatggaagcagagaaaatacattcaa
caggttagtcttttcattgtcgacgagctccatctaattggaggtcacggtggtacagtg
ttagaagtaatcgtctctagaatgagatatatttcaagtcagggagataataagatcagg
attgttgcgctttccacttcccttgcaaatgcgaaagatcttggtgagtggattggggcc
agttcccacggccttttcaactttcctcctggagtccgtcctgttccactggagatccac
attcaaggagtggatatatccagttttgaggccaggatgcaggcgatgaccaagccaacc
tacaccgccatagtccagcatgccaagaacaataagccggctatagtatttgtcccaacc
cgtaaacatgtccgcttgactgctgtggatctgatggcttactctcacatggacaactcg
cagagccctgatttcctgttagggaaattggaagagctggagccttttgttagccaaatc
cgcgaggaaacactgaaggagacactgcggcatggtgttgggtacttgcatgagggttta
tgcagtatggatcaggagatcgtgacccagctctttgaagctggacggattcaggcttgt
gtgatgagcagttcattgtgttggggcactccattaactgcgcatttggtggtcgtaatg
gggacgcagtattacgatggaagggaaaattcacattctgattatcccgtctctgatctg
cttcagatgatgggacgtgctagccgacctctacttgacaatgccgggaagtgtgtgata
ttctgtcatgcaccgcgtaaagagtattacaagaaatttttgtatgaagcgttccctgtg
gaaagtcatctccagcatttcttgcatgataatttcaacgcagaagtggttgctggggtt
atagagaacaagcaagatgctgtggattatcttacatggactttcatgtacaggaggctt
ccccagaaccctaactactacaatctccaaggagttagccacaggcatttgtctgatcac
ctatcagaactggtcgagaacaccttgtctgatcttgaagctagtaaatgcattgagata
gaggatgagatggacctttctcctctcaaccttggtatgattgcttcctattattacatc
agctacacaaccatcgagcgtttcagttctcttctgtcttctaaaaccaagatgaaggga
cttgttgagatcttaacatcagcttcggagtatgacacgatccctatacggcctggcgag
gaggacgcagttaggagactcatcaatcaccagaggttctcttttgagaacccaaaatgc
acagaccctcatgtgaaggcaaacgcgcttcttcaggcgcatttttcgaggcaaagcata
agcgggaacttggcaatggatcagcgtgaggtccttttatctgcaaccagacttcttcaa
gcgatcgtggatgtgatatcgagcaatgggtggctgaatcttgctctattagctatggaa
gtaagccagatggtgactcaaggcatgtgggagcgggactccatgcttctgcagctccct
cacttcacaaaggacttagccaaaagatgccaagagaatccggggaaaagcattgaaacc
gtgtttgatcttgtggagatggaggacgaagaacgccaagagcttctcaagatgaaagac
tcagagctactagacattgccagattctgtaaccgcttcccaaacatcgaccttacttac
gaggttgtgggcagtgaagaggtgaccccgggaaaagaggtgacattgcaagtgatgctc
gagagagacatggaggggaggacagaagtgggacccgtggatgcacccaggtatcccaag
accaaagaagaagggtggtggctcgttgtgggggacactgagaccaaccagttgctggca
atcaagcgtgtttcgttgcaacggaaattgaaggtgaagctggatttcgcagtaccgagt
gaaccaggagagaagtcttacacactatacttcatgtgcgactcttacttgggttgtgac
caggagtattctttctctgttgatgtcaaagaatccggcgctggagatcacatggaagag
tga
DBGET
integrated database retrieval system
