Eutrema salsugineum (saltwater cress): EUTSA_v10006566mg Help Entry EUTSA_v10006566mg CDS       T02985                                  Name (RefSeq) hypothetical protein   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism eus  Eutrema salsugineum (saltwater cress) Pathway eus03018   RNA degradation Brite KEGG Orthology (KO) [BR:eus00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     EUTSA_v10006566mg  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:eus03019]     EUTSA_v10006566mg    03012 Translation factors [BR:eus03012]     EUTSA_v10006566mg Enzymes [BR:eus01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      EUTSA_v10006566mg Messenger RNA biogenesis [BR:eus03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      EUTSA_v10006566mg Translation factors [BR:eus03012]  Eukaryotic type   Initiation factors    Initiation associated factors     EUTSA_v10006566mg BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Helicase_C DEAD R3H HA2_C OB_NTP_bind HA2_N Ank_5 AAA_19 Ank_2 nSTAND3 ATPase AAA_22 AAA_7 Sigma54_activ_2 ABC_tran Sigma54_activat PhoH AAA_11 Motif Other DBs NCBI-GeneID:  18994207 NCBI-ProteinID:  XP_006417895 UniProt:  V4L8Z9 LinkDB All DBs Position Unknown AA seq 1379 aa AA seqDB search MGKKLYLRQDTESSRVWAPKFLAEFRASGKESHTFDSTLTNSDRGIIHHMCQKMGIRSKS SGSGDQRRLSIFKCVAGTSMSDRAKRLEGRNKQSDGKGKVAERASRKKLKCVSFPQEAKP VLQELFTRYPPCDGDTTGTSLGIYTGHFGDQRKWKDEFFGKPQMKQKDVLSKAASLSSRL ANDKKFREIFKARTKLPIASFKDAITSAVESNQVVLIAGETGCGKTTQVPQYLLDHMWYS KRESCKIICTQPRRISAISVSERISWERGETIGKNVGYKVRLQSKGGRQSSIVFCTNGIL LRVLVGKGGGSCIPDITHIIVDEIHERDCYSDFMLAIIRDFLPSNPHLRLILMSATLDAE RFSGYFGGCPVVRVPGFTYPVGTFYLEDVLSVLKSDKNNHLISADSNIIVGKRDITDEDK VALDEAIDLAWNSDEFDALLDLVSSEGSHEVHNYQQSSTWLTPLMVFAGKGRITDVCKLL SLGADCKLKSKEGITALELAEKENQFEAAQIIREHADNLQSNSQQSQDLLDKYMATINSE EVDVGLIARLIRKICTGSEVGAVLVFLPGWEEISKTKEKLLASPYFADTAKFNIVCLHSR VPVEEQQKVFQRPPHGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQ SSWVSKANAKQREGRAGRCQPGICYHLYSQLRAASLAEFRIPEVRRMPVDELCLQVKMLD PSCNVNDFLQKLMDPPVDQSIANALTTLKDIGALTPQEELTELGQKFGQLPVHPRISKML YFAILVNCLDPALILACAADTKDPFTMPLMPGEKKKAVAAKLELASLYGGHSDHLATVAA FHCWKDAKRNGQSQEFCSQYFVSPNAMKMLDNMRDKLHGELQRHGLIPSNDSKCSLNAHD PGILRAVLAVGLYPMVGRMCPPSKNNRRSLVETITGAKVRVLSNYFNMSSGKDDEAIIIF DEITRGDWDVHIRKSTALPTIPLLLFSGEIAVASTESCDADKSDDEEDHKVENVDVMHID KAGGRPGERIMLAPENSVQVVVDRWLPFEITAFEIAQMYILRERLMASILFKVKHPQENL PPHLGASMYAIACILSYDGLPKHSVQTVAVEPIASVVDATGLRDDIPSAKPNGSQKNDPN NTPMGSKLKSANTSGLCNMEESLPSNLADGNVQPDPNTAPMEAVSAVQQPKKKQSRSKRC KSVNNVDLGNMEDNTPSDLANGNEQTEVKPANKSDLGFMMESLPSNLANGNEQDPNTAPT EAALAVKEPEKKRSRSKKRKSANESDLGNMIQSLPSTLANGNGQPDPNTALTEAASAVKE PEKKRSRSKKRKSANNSDLGNMEENKLKSDSGKEKESIHANLANGNEQPDPATAPMENA NT seq 4140 nt NT seq  +upstreamnt  +downstreamnt atgggtaagaagttgtatttgcgtcaagatacagaatcctctcgggtttgggcccccaaa ttcctcgcggagtttcgcgcctccgggaaagagtctcacacatttgacagtactcttaca aatagcgaccgtggcattattcatcacatgtgccaaaagatgggtatccgatcaaaaagt tcagggagtggggatcaaaggcgtctttcgattttcaaatgtgtagctggcacttcaatg tcagacagggcaaaaaggttggagggaagaaataagcaaagcgatggcaagggaaaggtt gcagaacgtgccagtagaaagaagctcaaatgtgtgtcattcccacaagaggcaaaacct gttctgcaggagctgtttactcgctatccaccttgtgacggagatactacagggacatca cttggcatatatactggacactttggcgatcaacggaaatggaaagatgaatttttcggg aaacctcagatgaaacaaaaagatgttctaagtaaggcggcatctctgagttctagactg gcaaacgataaaaaatttcgggagatctttaaagcacgaacgaagcttcccatcgcatct tttaaagatgccatcacatctgcagtggaatccaatcaggttgttcttattgctggtgaa actggttgtggaaaaactactcaggtgcctcaatatcttctagatcatatgtggtatagt aagcgagaatcttgcaaaatcatttgcacccagccacgtcgtatctcagctatttcagtt tctgaacgaatttcttgggaaagaggtgagactatagggaaaaacgtcggctacaaggtg cggctgcaaagtaaaggtggaagacaatcatcaattgttttctgcacgaatggcattctg ttgagggtgcttgtaggcaaaggcggtggtagttgtattcctgatataactcacattatt gtggatgaaattcatgaaagggattgctactctgatttcatgttggcgattataagggat ttccttccttcaaatcctcatctccgactgattctaatgagcgcaactcttgatgctgag aggttttccggatattttggaggctgcccggttgtccgagtgcctggattcacttatcca gtgggaaccttttatcttgaagatgtgctctctgtcctgaaatcagacaagaataatcat ctgatttctgcagactcgaacataatagttggcaagcgtgatattacagatgaagataaa gttgctttagatgaagcaatcgacttggcatggaatagtgatgagtttgatgctctctta gatctagtttcttctgaaggaagtcatgaggttcataattaccagcaatcatcgacctgg ctaacgccacttatggtctttgctggaaagggaaggattaccgatgtctgtaagctcctc tcacttggcgccgactgtaaactgaagtccaaagaaggtataactgcattagagttggcc gaaaaagagaatcaatttgaagctgctcaaataatcagggaacatgcggataacttgcag tccaattctcaacaatcacaagacctacttgataagtatatggcgacaatcaattcagaa gaagtagatgtgggtcttatagcacgtttaatcaggaaaatatgtaccggttcagaagtt ggtgccgttcttgtttttctacctggatgggaggagataagtaaaacgaaagagaaattg cttgctagcccctattttgcagatactgctaaatttaacattgtatgtcttcactcaagg gttccggtagaggaacagcagaaagtttttcaacgcccccctcatggttgtcgcaaaatt gtgcttgcgacaaatattgctgaatcagcagttactattgatgatgtggtctatgtgata gatagtggccggatgaaggaaaagagttatgatccttataatgatgtgtcaacgctccaa tcttcttgggtttcaaaagcaaatgcaaaacagcgggagggtcgagcagggcggtgccaa cctggcatttgttatcatctctattctcaacttcgggcagcctctttggctgaatttaga attcctgaagttaggaggatgccagtagatgaactctgcttgcaggttaaaatgctggat ccgagttgcaacgtaaatgatttccttcagaaattgatggacccgcctgttgatcagagt attgcaaatgccttaaccacccttaaagacattggtgctttgacacctcaagaagagcta acagaacttggacagaaatttggtcagcttccagttcatcctcggataagcaagatgctt tatttcgccatattagtgaactgtctggatccagcacttattttggcatgtgcagccgac accaaggatccgtttaccatgcccttgatgccaggtgaaaaaaaaaaagctgttgccgca aaacttgaacttgcatcgctttatggaggccacagtgatcaccttgcgactgtcgcggct tttcactgctggaaagatgccaaaagaaatggtcaatctcaggagttttgttctcagtac ttcgtctccccaaatgccatgaagatgctggataatatgcgtgacaagcttcacggggaa cttcaaagacatgggctaatccctagcaatgattcaaaatgtagtctgaatgctcacgat ccgggaattctccgtgctgttctagcagtaggattgtaccctatggtgggaagaatgtgc ccaccttccaagaataatagaaggtctctagtagagactattactggagccaaagttcgt gtgctttcaaactatttcaacatgtcctctggcaaggatgatgaagctataattattttt gatgagatcactcgaggagattgggacgtgcacataagaaaaagtactgctcttcccact ataccattgttactcttttcaggagagatagctgtggcttctacagagagctgtgatgct gataagagtgatgacgaggaagaccacaaagtagaaaatgtagatgtgatgcacatagat aaagcaggtggtaggcctggagagagaataatgctcgcaccggaaaattcagtccaggtg gttgtggatcggtggctcccttttgagattacagcttttgaaattgcccaaatgtacatc ttgagagagcgactaatggcgtccattttgttcaaggtaaaacatccacaagaaaatttg ccgccacatctcggagcttctatgtatgcaatagcatgtattctctcatatgatggcctc cccaaacattcagttcaaactgttgctgtggaacccattgcttcagtggtagatgcaacg ggtctcagagatgacataccttctgctaaacccaatgggagtcagaaaaatgacccgaac aatactccaatggggtcaaaactcaaatcagccaatacgtcaggtttgtgtaacatggaa gagagcttgccttccaatctcgctgatgggaatgtgcaacctgacccaaacactgctcca atggaagctgtttcagcggttcagcaaccaaagaagaagcagtcaaggtccaaaaggtgc aagtcagtcaataacgtggatttggggaacatggaagacaacacgccttctgatctggct aatgggaatgagcaaacagaggttaagccagccaacaaatcggatttgggtttcatgatg gagagcttgccgtccaatcttgctaatggaaatgaacaagacccaaacactgcaccgacc gaagctgctttggcagttaaggaaccagagaagaagcgatcaaggtccaaaaagcggaaa tcagccaacgaatcggatttgggtaacatgatacagagcttgccttctactcttgctaat ggaaatggacaacctgacccaaacactgctctgacagaagctgcttccgcagttaaggaa ccagagaagaagcgatcaaggtccaaaaagcggaaatcagccaacaactcggatttgggt aacatggaagagaacaagctcaagtcggactcaggtaaggagaaagagagcatccatgcc aatcttgccaatgggaatgagcaacctgacccagccactgctccaatggaaaatgcttag

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