KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006574mg
Entry
EUTSA_v10006574mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    EUTSA_v10006574mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eus03021]
    EUTSA_v10006574mg
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10006574mg
Transcription machinery [BR:eus03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     EUTSA_v10006574mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     EUTSA_v10006574mg
    U7-dependent histone pre-mRNA processing factors
     EUTSA_v10006574mg
SSDB
Motif
Pfam: Symplekin_C
Other DBs
NCBI-GeneID: 18992305
NCBI-ProteinID: XP_006415748
UniProt: V4MQW2
LinkDB
Position
Unknown
AA seq 935 aa
MPQGEDDTINGEVVAKRLRHNTNMHLAPQVQTSDSPQGHVSINGISSANHPTDSELTPVE
QMVSMIGALLAEGNRGAASLEILISKLHPDMLADIVITSMKHLPSSPPTLTTSLATPGDI
VVSSSINSMCSPAPQPQLHFDPTLPAGSSFSDVPSFNNATADPRRDPRRDPRRMDPRRSN
SSVGPTSLPVGEGKEPVPVQMDISTLPSKPLSVPVVTAGASGSVHPTIVERSQNKVVGSS
VIWDQPDCREHLLTIPDECAYPSKGRPSLDVPVSPCRDDEGIRETKFLGSETKCDLDLVS
IPDFDQHSPSASVPDFDLHPPATSNITAAEESYRELAAVPSYIELTTEQSKTVGKLAIER
IIESNRHVCGFDCNNIRVALIARLIAKIDAGNDVANILREHISVDHREFKGHELVLHVLY
HLHSMANLDTDESSSYATVYENFLIAVARSFLDALPASDKSFSRLFGEAPHLPDSALKLL
DELCSTRHDPIGREICDSERVTQGLGAVWSLILVRPNERKACLAIALKCSVHSEEDIRAK
AIRLVTNKLYHLTYISEHVEQFATDMLLTAVNSETDLAQTGFIAEGKTEAKSQITSTSDS
PRSGTSDIHSQQDLQTARDVSVLSISEAQRLISLFFALCKKKPSLLRLVFEVYGRAPKTV
IQAFHRHIPILIRELGSSYVELLQIISDPPKGSENLLTLVLQILTQELAPSLDLIATVKH
LYETKLKDVSILIPLLSSLTKDEVLPIFPPLLNLPPDKFQLALAHILQGSAHTGPALTPA
EVLIAIHDVVPEKDGPPLKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRT
VIQAIDAFPTLVDFVMEILSKLVSKQIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQL
ESIMKKFPDLRPSLTAYANQPTIRASLPNSFSSWA
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgccccagggtgaagatgatactatcaatggagaggttgttgcgaagcgcttacgccat
aatactaacatgcatttggctccgcaagttcaaacaagtgattctccacagggacatgtt
tctattaatggcatatcctctgctaaccatcctacggacagtgagttgactccggtggaa
caaatggtttcaatgattggtgctttgcttgctgaagggaacagaggagctgcatcactt
gaaattctcatttctaagcttcatccagatatgcttgctgatattgtaataacaagcatg
aaacacttgcctagtagccctcctacattgacaacttcactggctactccaggagatatt
gtggtatcttcttctataaattccatgtgttctccggctcctcagccccaacttcatttt
gatccaacccttcctgctgggtcatcattttctgatgtacctagctttaataacgcgact
gcggaccctagacgcgacccaagaagggatccccgtcgcatggatccaaggcgttcaaat
tcatctgtgggaccaacatcactgcctgtaggtgagggtaaagaaccagtcccagtacag
atggacatctctaccttaccgagcaagccactttcggttcctgttgtcacggcaggggct
agtggttcagtacatccaacaatagtagaacgtagccaaaacaaggtggtgggaagctca
gtaatttgggatcagcctgattgtagagagcacttgttgactattcccgacgagtgtgct
tacccctcaaagggcagaccatctttagatgttccagtatctccttgcagggatgatgaa
ggcatcagagaaacaaagtttttaggttctgaaacaaagtgcgatttggatctggtttct
atcccggattttgatcaacattcgccttcagcatcagtccccgattttgatctacaccct
cctgcaacgtcaaacattactgcagcagaggaaagctatcgagagttggcagctgttcca
tcttatattgaacttactaccgagcaaagcaaaactgtaggaaagttggctattgaacgg
ataattgaatcaaatagacatgtctgtgggtttgattgtaacaatattcgcgtggcattg
attgctcgattgattgccaagatcgatgctggcaatgatgttgcaaacatactaagagag
catattagtgtggatcatcgagaattcaaggggcatgaacttgttttacatgttctgtac
catctgcattcaatggcgaatctggacacagatgaatcctcttcctatgcaactgtttat
gaaaattttctcatagcagtggcaagatcatttctggatgctctacctgcttccgacaag
tctttcagcagactttttggagaagctccacatttacctgattctgccttaaagctacta
gatgaactctgctccactcgtcatgacccgattggaagagaaatttgtgatagtgaacgt
gttacccaagggcttggtgctgtttggagcttaattttagtgcgtccaaatgagcgaaaa
gcatgcttagctatagcattgaagtgttctgttcattctgaagaagacatccgtgcaaaa
gccatccgacttgtcacaaacaaactatatcacctaacatacatatcagagcatgttgag
caatttgcaactgatatgttgttgactgctgtgaactctgaaacagatctcgcacagact
ggatttattgcagaaggaaaaacagaggctaaaagtcagataacttcgacaagtgattct
ccacggtctggaacctccgacattcactcacagcaggatctacaaactgctcgtgatgtt
tctgttttatcaatttctgaagctcagagactaatatctctgttcttcgctttatgtaaa
aagaaacctagtctccttcgacttgtctttgaagtttacggtagagctccaaaaacagta
attcaggcttttcatcgacatatacctatcctgatacgagaattaggttcatcttatgtg
gaactgctccaaataatatctgatcctcctaagggaagtgaaaatctattgacgttggtg
ttgcaaatattaacacaagaattggcaccttcgttggatttgattgctactgtaaagcat
ctatatgaaacgaagctaaaggatgtttcaattcttattcctttgctttcctcactcact
aaagacgaggttttgcccatctttcctccccttcttaatcttccacctgataagttccaa
cttgcactagctcatatattacagggttctgctcacaccggccctgccctaacacctgcc
gaggtactaattgctatccacgatgttgttcctgagaaggatgggccaccactgaaaaag
ataacagatgcatgttcagcttgctttgagcaacgcactgttttcacgcagcaagtctta
gcaaaggccctcggtcagatggttgatcgaacacctctgcctttactcttcatgagaaca
gtaattcaggcaatcgatgcttttccaacactggttgactttgtcatggaaatcctttcg
aagttggttagtaaacagatatggagactgccaaaattatggcctggcttcttgaaatgt
gtgtctcagacacagccacattctttccctgttttgttggagttaccaatgcctcagcta
gaaagtatcatgaagaagtttcctgatctaagaccttcccttactgcttacgcgaatcag
ccaactatcagagcttctctaccaaattctttcagttcttgggcttga

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