Eutrema salsugineum (saltwater cress): EUTSA_v10006650mg
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Entry
EUTSA_v10006650mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10006650mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10006650mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10006650mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EUTSA_v10006650mg
Complex C
U4/U6.U5 tri-SnRNP related factors
EUTSA_v10006650mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
PWI
nSTAND3
SRP54
TsaE
Cas3-like_C_2
Flavi_DEAD
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18991797
NCBI-ProteinID:
XP_006415185
UniProt:
V4L1D6
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MASNDLKTWVSDKLMVLLGYSQTAVVNYLIAMAKKSKSPAELVGELVDYGFSSSGDTRSF
AEEIFARVPRKAAGVNLYQQREEEAAMLVRKQKTYALLDADDDEDEVVVEKKPSASESRK
SDKGKKRFRKKSGQSDDSEDEVSVREDNRHVKRKVSEDEDDGSESEEEMLRDQKEREELE
QHLRDRDTARTRKLTEQKLSKKEQEEAVRRANALEKDDLHSLRKVSRQEYLKKREQKKLE
ELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEEGGVDQEKRFAVA
VQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVFEDQINFIKESV
MAGENYEHDMDAKESQDAAERTALEELQEVRKSLPIYAYREQLLQAVEEHQVLVIVGDTG
SGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDC
TSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDL
KLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINFTSAPEADYMDAAIVTVLTIHVRE
PLGDILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEG
ARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISKASATQRAGRA
GRTSAGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDLINFDFMDPPPA
EALVKALELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAM
LSVGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNYSTQWCYENYIQV
RSMKRARDIRDQLEGLLERVEIEISSNLNDLDSVRKSIVAGFFPHTAKLQKNGSYRTVKH
PQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLKDVEDG
ASKKMPKGAGKAAM
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaatgatttaaagacctgggtttccgataagctgatggtgctacttggctat
tctcaaacagctgttgttaactatctcattgcaatggctaaaaaatcaaaatcaccagct
gaacttgtgggagagttggtggattacgggttttcttcttctggtgatactcgttcgttt
gctgaagaaattttcgccagagtccctcgtaaagctgctggtgtgaatctttaccaacaa
cgggaagaagaggcagcaatgctagtgaggaagcaaaaaacatatgctcttttagatgct
gatgatgatgaagacgaagtcgttgtggagaaaaaaccttcagcttctgaatctagaaag
tcagataagggcaagaaaaggtttagaaagaaaagtgggcagtcagatgacagtgaggac
gaggtgagtgttagagaggataatagacacgttaaaagaaaggtttctgaagacgaggat
gatggttctgagtcagaagaggaaatgttgcgtgaccaaaaggagagagaagaactggag
cagcatttaagagatcgtgatactgctcgaacaagaaagctaacagagcaaaagttgtca
aagaaagagcaagaggaggctgttcgaagggcaaacgctttggagaaggatgatttacac
tccttaaggaaagtctcaagacaagaatatttaaagaagagagaacagaagaaattggaa
gaactaagggatgagatagaagatgaacaatatcttttcggaggtgaaaagctcacagaa
acagagcttcgtgagtttagatacaagaaagagctatatgatctagtgaagaaaagaaca
caagatgaagataatgttgaggaggggggtgttgatcaggaaaagagatttgctgttgcg
gtacaacgatacagggacctggattcaacagagaaaatgaatccatttgcagagcaagaa
gcttgggaggaccatcagattggaaaagcaacattaaaatttggcgcaaagaataagcaa
gcctcagacgattatcagtttgtgtttgaggaccaaataaatttcataaaggaatctgtg
atggctggtgaaaattatgaacatgatatggatgctaaagaatctcaagatgcggcagag
agaacagctttagaagaacttcaggaggtcagaaaaagcctgccaatttacgcgtatcgt
gagcaactgcttcaggctgtggaagagcatcaggttcttgtcattgtgggagacactggt
tcaggaaagacaacacaaataccacaatatctccatgaagctggttacacaaagcgcgga
aaggttggttgtacgcagcctcgaagagttgcagctatgagtgttgctgcccgtgtggct
caagaaatgggtgtcaaactcggacatgaggttggctactccattagatttgaggattgt
acttcagacaaaacagttctgaagtatatgactgatggaatgcttttgcgtgagctgctt
ggcgaaccagatctggccagctacagtgtcgttattgtggatgaggctcatgaaagaaca
ttgtcaaccgatatactgtttggattagttaaggatatagcgcggtttcgacctgatttg
aagttgttgatatctagtgctacaatggatgcagaaaagttttctgattattttgataca
gccccaatttttagtttcccgggaagaaggtatccagttgaaattaacttcacaagtgca
cctgaagctgattacatggacgcagcaatagttactgtccttactatccatgtgagagag
ccacttggagatatattggtcttcttcacaggtcaagaggaaattgaaactgcagaagag
atcttgaagcacaggataagaggtttgggtacaaaaattcgtgaactgattatatgcccg
atctacgcaaaccttccaagcgaactccaagcaaagatatttgagccaactccagaaggg
gcacgaaaagtagtcctggcaacaaatattgctgaaacatcattgacgattgatggtata
aagtatgttgttgatccaggctttagcaagatgaaatcatataatcctagaacagggatg
gaatctttgcttattactcctatctctaaggcttcagcaactcaacgagctggtagagct
ggaagaacaagcgcaggaaaatgttaccgtctgtacacagcgtttaattacaacaacgac
ttagaggaaaacacggtgccagaagtccagaggacgaatcttgcaagtgttgtacttgcg
ttgaagagtcttgggattcacgatctgataaactttgatttcatggaccctccaccagct
gaagcacttgtgaaggctttagaactgctgtttgctctgggtgctttaaataagctaggt
gaattgactaaagctggtagaaggatggcagagtttccccttgatccaatgttgtcgaag
atgattgttgtttctgacaagtacaagtgctcagatgagataatatcaattgctgctatg
ttgtcagttggaggctctatcttctatcgtcccaaggacaagcaggttcacgccgacaac
gcaagaatgaatttccacactggaaatgttggtgaccacattgctttgctaaaggtttat
agttcatggaaagaaacaaactattctactcagtggtgctacgagaactacattcaggtc
cggagcatgaaaagagccagagatatccgtgaccaattggaaggacttctcgagagagtg
gaaatagaaatcagctcaaacctgaatgatttggactcggttaggaaatccatcgtagct
ggtttttttccgcacactgcgaagctgcagaagaatggatcatatcgaactgtaaagcat
cctcaaacagtgcacatacatcccaactcaggcttatctcaggtattgccgagatgggtt
gtatatcatgaactagtgcttacctccaaggaatatatgcgacaggtcacggagttgaaa
ccagagtggttgattgagttagctcctcactactaccagctcaaggacgttgaagatggt
gcatcaaagaaaatgcccaaaggagctggaaaagctgcaatgtaa
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integrated database retrieval system
