Eutrema salsugineum (saltwater cress): EUTSA_v10006915mg
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Entry
EUTSA_v10006915mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10006915mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10006915mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
EUTSA_v10006915mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
Iml2-TPR_39
TPR_2
NUP50
Motif
Other DBs
NCBI-GeneID:
18993123
NCBI-ProteinID:
XP_006416668
UniProt:
V4MTB2
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MADKYNIEEAEALARRALHLPIAQATPIYEQLLSLYPTSARYWKQYVEAQMAVNNDDATK
QIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFTLNYIGTDIASGPIWT
EYITFLKSLPALNPHEDSQRKIALRKVYQRAILTPTHHVEQLWKDYENFENSVSRQLAKG
LVNEYQPKFNSARAVYRERKKYIEEIDWNMLAIPPTGSSKEEAQWVAWKKFLCFEKSNPQ
RIDTALSTKRIIYVYEQCLMCLYHYPDVWYDYAEWHIKSGSTDAAIKIFQRGLKAIPDSE
MLKYAYAELEESRGAIQSAKKLYESILGVSTNSLAHIQFLRFLRRAEGLESARKYFLDAR
KSPSCTYHVYIAFATMAFCFGKDPMVAHNIFEEGLKRYMNEPVYILEYADFLTRLNDDRN
IRALFERALSTLPAEESAEVWKRFIQFEQTYGDLASILKVEQRRKEALFGKGEEGSFALE
SSLQDVASRYSYMDLWPCTSKELDHLARQELLVKNMNKKVEKTNLTHGPAAIGSVASSSK
VVYPDITQMVVYEPTKKSEFASSANPVAASASTTFPSNVTATATHGSASIFDEIPKTTPA
ALSAFLANLPIVDGPTPNVDVVLSICLQSDLPTVQTAKQSFAAKGNAPSQNVPSGSTRGG
SQRLTRDRRATKRKDSDRQEEDDTTSIQSQPLPTDVFRLRQMRKARGISTSSQTPTGSTS
YGSAFSGELSGSTG
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagtacaacatcgaggaagcagaggctttggccaggagagccttgcactta
ccgattgctcaggcaacgccgatctacgagcagcttttgtcactgtatcccacttctgcg
agatattggaagcaatatgtggaggcacagatggctgtaaacaatgatgatgctacgaaa
cagatatttagccgttgcttgctgacctgccttcaagttcctctttggcaatgttacatt
cggttcatcagaaaggtctacgacaagaaaggagcagagggtcaagaggagaccacaaag
gcttttgagtttacgcttaattatattgggacagacatagcatctggacctatatggacc
gagtacattacctttctaaagtctcttccggctcttaacccccatgaagattcgcaacgg
aagattgctctacgaaaagtgtatcagagagctatattaactccgactcaccatgttgaa
caactatggaaagattatgaaaactttgaaaattctgttagccgtcaattggccaaagga
cttgtaaatgagtatcaaccaaaatttaacagtgccagagccgtgtatagggagcgcaag
aagtacattgaagaaattgattggaatatgcttgccatacctccaacaggatcttcgaag
gaagaagctcaatgggtggcctggaagaagttcttatgctttgaaaaaagcaaccctcaa
aggattgacacggccttgtcaactaagcggattatatatgtctatgaacagtgtctaatg
tgcttatatcactatcccgatgtatggtatgactatgctgagtggcacataaaatctggt
tcgacggatgctgcaatcaaaatatttcagcgaggtcttaaagccattcctgattcggaa
atgttgaaatatgcttatgctgagttggaggaatctcgtggagcaattcagtcagcaaag
aaattatatgaaagcattttgggggttagcacaaactctttggcacatatacaattcctt
cgttttctccggagggccgagggtcttgaatctgctcgcaagtactttttagatgctaga
aaatctcccagctgcacatatcatgtgtatattgcttttgctacgatggccttttgtttt
ggcaaggatccaatggttgctcataatatctttgaggaggggttgaaacgctatatgaat
gaacccgtttacatccttgagtatgcagatttcttgactagattgaatgatgatagaaat
atcagagctctatttgaacgggcattaagcacactaccagctgaagaatctgctgaggtc
tggaaaagattcattcagtttgagcaaacatatggagatcttgctagtatactaaaggtt
gagcagagaaggaaagaagcacttttcggaaaaggagaagagggatcttttgctctagag
agttcacttcaagatgttgcttctcggtacagttacatggatctttggccatgcacttcc
aaggagcttgatcatttagccagacaagagttgcttgtgaagaatatgaataagaaagta
gagaagacaaatctaactcatggacctgcagctataggtagtgtagcatcttcgtcaaaa
gttgtttatccagatataactcagatggtcgtatatgagccgacaaagaaatcagagttt
gctagttctgcaaacccagtggcagcttctgcttcgaccacctttccaagtaatgtgacc
gcaactgcaactcatggatcagccagcatatttgacgaaataccaaagactactccagct
gcattatcagcgtttttagctaacttgcccattgttgacggtcctacacccaatgtggat
gttgttctgtcaatatgtttgcagagtgacttaccaacagttcaaactgctaagcagagt
tttgctgctaaaggcaatgctccaagtcaaaacgttccctcgggttcaacccgaggtgga
tctcaaagattaacaagggacagaagggctacaaaaagaaaagattcagataggcaagaa
gaagatgatactacatccatacaaagccagcctctacctacagatgttttcagactgagg
caaatgcgtaaagctcgagggatctcaacatcatcacagacaccaaccggttccacatcg
tatggcagtgccttctccggtgagctatctggcagcaccggctaa
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