Eutrema salsugineum (saltwater cress): EUTSA_v10006970mg
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Entry
EUTSA_v10006970mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10006970mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10006970mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10006970mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
Step II factors
EUTSA_v10006970mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
AAA_19
HA2_N
nSTAND3
PhoH
AAA_30
ABC_tran
FtsK_SpoIIIE
NB-ARC
AAA_16
T2SSE
AAA_23
TsaE
Motif
Other DBs
NCBI-GeneID:
18992454
NCBI-ProteinID:
XP_006415916
UniProt:
V4KSI8
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MVQGQSPTASRFSTRQKIAEHRKSLPIASVEKRLIEEVNNNDILIIVGETGSGKTTQLPQ
FLFSAGFCREGKMVGITQPRRIAAVTVAKRVAQECDVPLGQRVGYSIRFDDSTSSSTRLK
YMTDGLLLREALLDPLLSRYSVIIVDEAHDRTVHTDVLLALLKMIQRARSKPVNERSEIG
NASGENGVQRNGVLRGCQGRKVSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDI
FYTAHPESDYVDAALVTIFQIHLEEKPGDILVFLTGQDEIESVERLVLERLKHLSEDKRK
LQPLAIFSALPSEQQMRAFAPAENGFRKVILATNIAETSITIPGIRYVIDPGFVKARTYD
PKKGMESLDVVPASKAQTLQRSGRAGREGPGKCFRLYPESEFAKLEDSTKPEIKRCNLSN
VILQLKALGIDDIVGFDFIDKPSRGAIVKALAELRLLGALTDDGKLDDPVGYQMSRLPLD
PVYSRALIRANQFNCLEEMLITVAMLSVESIFYDPREKREEARTSRNHFASIEGDHLTYL
SVYRELDEFLEKKKSAGGANKIDKSMKKWCINNFVNNRSLKHARDTYRQIREHVEQMGFN
VSSCGNDLLEFRRCLAASFFLKAAQRQLDGTYRALESGEVVHIHPTSVLFRAKPECVIFD
ELMQTSKKYIKNLTRIDPLWLPELAPHYYKAEE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaaggtcaatctcctactgcttctcgcttcagcacgaggcaaaagatagcagaa
catagaaagtctcttcctatcgcttcagtggagaaacgtctgattgaggaggttaacaac
aatgatattctgattatcgtgggtgaaactggcagtgggaaaactactcaattgcctcag
ttcctattcagtgctggtttctgtcgagaaggaaagatggtggggataacacagccgagg
cgtattgctgccgtgactgttgctaaaagggtagctcaggaatgtgatgttccgttgggc
caaagagttggctattccattaggtttgatgattctacttctagctcaacgaggttgaaa
tacatgacagatggattattgttgagagaagctctgttggatccgcttctttctagatat
tcagtcattattgtcgatgaagctcatgacaggactgttcatactgatgttctgctggcc
ttgcttaaaatgatacagcgggctcggtcaaagcctgttaacgagagaagtgagattggt
aatgcaagtggtgagaatggtgttcagcggaatggcgtattgagagggtgtcaaggcagg
aaagtatctccgttgaagctgataattatgtctgctagtttggatgcacgtgttttctct
gagtattttggtggtgccaaagctgttcatgtgcaagggcgacagtttcccgttgacatt
ttttacactgctcatcctgaatcagattatgtagatgcagctttggttaccatatttcag
attcatttggaggagaagccaggggatatacttgttttcctcactgggcaagatgagatt
gaatctgttgaaagacttgtcctagaaagacttaagcatttatctgaagacaagcggaag
ctacaaccacttgctatcttttctgctcttccatcagagcagcaaatgcgagcttttgcc
ccagcggaaaatggttttcgtaaggtgattttggccacaaatatagcggagacatcgatt
acaattcctggaataagatatgtgatagaccctgggtttgtcaaggcacgaacctatgat
ccgaagaaaggaatggagtcgcttgacgttgttccagcatcaaaagcacagacgcttcaa
agaagtggacgcgcaggtcgtgagggccctggaaagtgctttcgtctttatccggaaagc
gaatttgcgaaactggaggattcaaccaaaccagagatcaagagatgcaatctctcaaac
gttattttgcagctgaaggctctgggaattgatgatattgttggatttgattttatagat
aaaccttcaaggggcgcaatagtaaaagcattggcagagttgcgcttgctcggtgccttg
acagatgatggtaaactagacgatcccgttggctaccaaatgtcacggctcccactggat
cctgtgtactcccgagctctaattcgggccaatcaattcaactgtctcgaggaaatgttg
atcactgttgcaatgctctctgtggaatccatattttatgatcctcgtgagaagagagaa
gaggcaagaacttcaagaaaccactttgctagcattgaaggggatcacctaacttatctt
agtgtttaccgggagttagatgagttcttggagaagaaaaaatcagctggcggcgcaaac
aaaattgataaaagtatgaaaaaatggtgtattaataacttcgtgaataaccgctccttg
aagcatgctcgtgatacatataggcaaatccgtgaacatgttgaacagatgggttttaat
gtgtcttcatgcggaaatgacttgcttgagtttcgtagatgtcttgctgcatcgtttttc
cttaaagcagcacagagacaattggacggtacatacagggctttggaaagtggcgaggtt
gtccatatccacccaacttctgttttattccgtgccaaaccagagtgtgttatattcgac
gagctcatgcaaaccagcaaaaagtacatcaagaacctcacaagaattgatcccttatgg
ttgcctgagttggctcctcattattacaaagcagaagagtga
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