Eutrema salsugineum (saltwater cress): EUTSA_v10007064mg
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Entry
EUTSA_v10007064mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EUTSA_v10007064mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10007064mg
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10007064mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EUTSA_v10007064mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
EUTSA_v10007064mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
Med26_C
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
18992056
NCBI-ProteinID:
XP_006415471
UniProt:
V4KR94
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MEDADGLSFDFEGGLDSGPAQPTASVPVAPPENSSSAAVNVTPSYDHSSATVSGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNYGPNRFYQPRNVAPQLPD
KPQVQVLTQGQPQESGNLQQQQQQQQQPQQSQHQVSQTQIQNPADQTNRTAHPLPQGVNR
YFVVKSCNLENFELSVQQGVWATQRSNEAKLNEAFDSVDNVILIFSVNRTRHFQGCAKMT
SRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQ
ELEPSIGAELASLLYLEPDSKLMAISIAAEAKREEEKAKGVNPEYRADNPDIVPFEDNEE
EEEEEDESEEEEDGMANGPQGRGRGRGMMWPPQMPLGRGIRPMPGMGGFPLGVMGPADAF
PYGPSGYNGMPDPFGMGPRPFGPYGPRFGNDFRGPVPGMMFPGRPPQQFPHGGYGMMGRG
PHMGGMGNAPRGGRPMYYPPAPTTSSARPGPSSRKTPERSDERGVAVDHQQTSHEMEQFE
VGNSLRNEESESEDEDEAPRRSRHGEKKRR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgatggtctcagcttcgatttcgaaggcggtctcgattcaggacctgct
cagcccacagcttcagtcccggttgctccgcctgaaaactcttcctccgccgctgttaac
gtaacaccgagctatgatcattcttccgcgacggtgtctggagctgggaggggaagaagt
ttccgtcagaccgtttgcaggcactggcttcgaggtctgtgtatgaaaggcgacgcatgt
gggtttctccatcaatacgataaagcccgtatgccaatctgccgttttttccgtttatac
ggtgaatgtcgagagcaggattgtgtctataagcataccaatgaagatatcaaagaatgc
aatatgtacaagctgggattttgtcccaatggtcctgattgtaggtataggcatgcgaag
ctacctggacctccacctccagttgaggaagttcttcagaagatacaacagctgacttca
tacaattatgggccaaataggttctatcaaccacggaatgttgctccgcagctaccagat
aaacctcaggtgcaggttctaacgcaaggccagccacaagaatcaggtaacttgcagcag
cagcaacaacaacaacaacaacctcagcaatcacaacaccaggtcagccagactcagata
caaaaccctgctgaccaaacaaacagaacagctcatcctttgcctcaaggggtaaatagg
tattttgtagttaaaagttgcaatctagaaaattttgagttatctgtgcaacaaggagta
tgggctacacaacgaagcaatgaagcaaaacttaatgaagcgttcgactctgtggataat
gtgatcttgatattctctgtcaaccggacacggcatttccagggctgtgctaagatgaca
tccagaattggtggttacattggtggaggaaactggaaacatgaacatggaactgcacag
tatggccggaacttttcagttaaatggttaaagttgtgcgaactgtcctttcacaaaact
cggaatttgaggaatccttacaatgaaaacttacctgtgaagataagcagagactgtcag
gagttagagccctcaattggtgcggaactggcttctttgctttatttggaaccagatagc
aagcttatggcaatatccatagctgcggaagccaaacgagaagaagagaaagcaaagggc
gtgaatccagagtacagagctgacaacccagacatcgtcccatttgaggacaacgaagaa
gaagaagaggaagaagatgagagcgaggaggaagaagatggcatggcgaacggtcctcaa
ggcagaggaagaggaagaggaatgatgtggcctcctcaaatgcctctaggacgtggaatc
agaccaatgcccggaatgggaggtttccctctcggagtaatgggccctgcagatgccttt
ccctatggacctagtggctataacggtatgccagatccatttggtatgggtccgagaccc
tttggaccgtatggaccaaggtttggtaatgatttcagaggacctgtacctgggatgatg
tttcctggtaggcctccgcaacagtttccacatggaggttatggtatgatgggacgtggc
ccgcatatgggaggaatgggaaacgctcctcgaggaggcaggccaatgtattatccacca
gcaccaacaacatcatctgcacgtcctggcccttctagccggaaaacacctgagagaagc
gatgagagaggagtggcggtggatcatcaacagacatctcatgagatggagcagtttgag
gttggaaacagtttgagaaacgaagagagtgaaagcgaagacgaagacgaagctccacga
cgatcaaggcacggagaaaagaagcgtcggtga
DBGET
integrated database retrieval system
