Eutrema salsugineum (saltwater cress): EUTSA_v10007092mg
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Entry
EUTSA_v10007092mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10007092mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10007092mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EUTSA_v10007092mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10007092mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18994092
NCBI-ProteinID:
XP_006417765
UniProt:
V4L8M5
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNL
AGTLGSRNSGLNGVPSAGVQQQNGSISNGRFASGNLPAGLSQISHSHGSSHGHSGLTNRG
GMGVSPILGNAGSRITSSMGNMVGGGSMGRTLSSGGGLSIPSLGSRLNLAVNNGSGNIGQ
NRMMGGVLPQGSPQVLSMLGNSYPTAGGLSQNHVQAMNSLSSMGLLNDMNSNDTSPFDIN
NDFPQLTSRPSSAGGQGQLGSRLKQAIGLSPIVQQNQEFSIQNEDFPALPGYKGSNADYP
MDLHHKEQHHENSILMMQSQQLSQMGRSGGFNLGGAYTSHRPQQLQQQQQQHAQAVSSSG
VSLHGSDIFSSSHPSYHSQTGGPQGIGLRSMNSANSVTGMGYDQPLQQYQHHQNTSQYRL
QQMSAASQPFRDVGLKSMQVTQSHHDRFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNL
NSTENLHKTFGSPWSNEPSKDDPEFSIPQCYFAKNPPPLHQGLFTKLLVETLFYVFYSMP
KDEAQLYAANELYNRGWFYHKEHMLWFIRNGEPLVKTNAYERGSYLCFDPNSFEIVQKEN
FVLYYEMLENRPSLSQY
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtttacttaattcttcaataaacggatctacctcgaatttatcagacggttca
gggagaacttttacttcttctttctctggccagtctggggcagcgtctccagttttccat
catgctggatctattcagggccttcataatattcatggaaactttaatgttcccaacttg
gccggtacacttggatcgagaaattcaggtctaaacggtgttccttctgctggagtccaa
caacaaaatggcagtatttcaaatggaagatttgcatccggcaatcttccagctgggctc
tctcagatatcccattcccatggtagctctcatggacactcaggactcaccaatagagga
ggaatgggagtttctccaattttggggaatgcaggctctagaataacaagttctatgggg
aatatggttggtggaggctcaatgggcaggaccttgagctctggcggaggattatctatt
ccgagtcttggttctcggctaaatttggcagtaaacaacggatctggaaatattggacaa
aaccgaatgatgggtggggtccttccccaaggatctccgcaggttctttccatgctggga
aattcctaccctacagctgggggactttcccaaaatcatgttcaagccatgaatagtcta
agctcaatgggcttgctgaatgacatgaactccaacgacacttctccgttcgatataaat
aatgattttcctcagctcacaagccgccccagttctgcaggcggtcaaggacaattgggg
tctcgattgaaacaagccattggactcagccccatagttcagcaaaaccaagaattcagc
atccaaaatgaagattttcctgcattgccaggatataaaggtagtaatgctgattatcca
atggatttgcatcataaagaacaacaccatgagaattcaattttaatgatgcaatctcaa
caattatctcagatgggaaggtctggtgggtttaacttagggggagcgtacacgtcacac
cgtcctcaacaactacaacaacagcaacaacaacatgctcaagctgtgagtagtagtggt
gtctccttgcatgggtctgacatcttctcatcctcgcatccgtcttaccactcgcagact
ggtggacctcagggtattggattaagatctatgaattctgcaaattctgtcactggaatg
ggttatgaccagcccctccagcaatatcagcaccatcagaacacgtcccagtatcgcttg
cagcagatgtcagctgctagccaacctttcagagatgtgggattaaagtcaatgcaggtg
acacagtcacatcatgatcggtttggcttgctcggtttgcttagtgtgataaagatgagc
gaccctgacttgacatctttggcacttgggattgatctgacgacattggggttaaatttg
aactcaacagaaaatcttcataagactttcggctcgccttggtccaatgaaccctctaaa
gatgatcccgaattcagtatacctcagtgttacttcgcaaaaaaccctccacctctacat
caagggctctttacaaaattactggtagaaacattgttttacgtattctatagcatgccg
aaagatgaggcgcaattatacgcggcaaatgaactttacaataggggttggttctaccac
aaagaacacatgctgtggttcattagaaacggagaacctctcgtcaaaacaaatgcgtat
gaaagaggatcatacctctgttttgatccaaactcatttgagatcgttcaaaaggaaaat
tttgttctttattacgagatgctggaaaatagaccgtccctatctcagtactga
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