KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10007215mg
Entry
EUTSA_v10007215mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10007215mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10007215mg
Spliceosome [BR:eus03041]
 Complex C
  Other components
   Step II factors
    EUTSA_v10007215mg
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML ANAPC4_WD40 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF4 WD_LRWD1 WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_SCAP PQQ_2
Other DBs
NCBI-GeneID: 18993821
NCBI-ProteinID: XP_006417451
UniProt: V4KWR8
LinkDB
Position
Unknown
AA seq 571 aa
MDLIQSYDEEAVSSSPESSPPRILKAKSSAPEVDDTALALTVANVNQSKSNPINPTQHVV
AFNPTYEQLWAPICGPAHPYAKDGIAQGMRNHKLGFVEDASIGSFVFDEQYNTFHKYGYA
ADPSGMNYVGDVEALKQNDGVSVYNIPQSEQKRRKLEKNKEEREGEEKKEELEPEADNPA
TEAWLLKNRKSPWSRKKEVVQGELTEEQKKYAEDHAKKKEEKGQQGEAKGEHYADKSTFH
GKEEKDYQGRSWIEAPKDAKANNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLLLSAG
MDSKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGTKFLTAGYDKNIKYWDTETGQVIS
TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDINTGEITQEYDQHLGAVNTITFVD
NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNGNWLAAQSLDNQILIY
STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC
HNGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq 1716 nt   +upstreamnt  +downstreamnt
atggatctgattcagtcctacgacgaggaagccgtatcttcctcgccggaatcttcgccg
cctcgtattttgaaggcgaagtcatcggcgccggaggtagacgatacggcactggctctc
acagtggctaacgtgaatcagtcgaagtcgaatccaatcaatccaacccagcacgtcgtc
gcgtttaaccctacttatgagcagctttgggctccgatttgcggccccgcgcatccgtac
gccaaagacgggatcgcacaggggatgcggaaccacaagctagggtttgtggaggacgcc
tcgattggctccttcgtgttcgacgagcagtacaacacttttcacaagtacggttacgcg
gcggatccgtccgggatgaattacgtcggcgacgtggaggccttgaagcagaacgacggc
gtttctgtttataatataccgcagagcgagcagaagcggaggaagcttgagaagaacaaa
gaggagagagaaggggaagagaaaaaggaagagcttgagccggaggctgataatcctgcg
acggaggcgtggcttttgaagaataggaaaagcccctggtcgaggaagaaggaggtggtt
cagggagagttgacggaggagcagaagaaatatgcagaggaccacgcgaagaagaaggaa
gagaagggacaacaaggcgaagccaaaggagagcattacgcggacaagagcactttccat
ggcaaggaggagaaagattatcaaggcaggtcatggattgaggctcctaaagatgcaaag
gcaaacaacgatcactgctacattccaaaacgtctggttcatacatggagtggtcacacg
aaaggtgtttctgctattcggttcttccccaagcacgggcatttgcttctctctgcaggt
atggattctaaggttaagatttgggatgtgtacaactctggtaaatgtatgaggacttac
atgggtcacgccaaagctgtgagggatatttgcttctctaatgatgggactaagttctta
actgctggatatgataagaacattaagtattgggacacggaaactgggcaagttatatcg
actttctcgactgggaagattccgtatgtggttaagctgaatccagatgatgataagcag
aacattttgttggctggtatgagtgataagaagattgtgcagtgggatattaatacaggg
gagattacgcaagagtatgaccagcacttgggtgctgttaatacaatcacatttgtggac
aacaacagaagatttgtcacatccagcgatgacaagtctctccgtgtgtgggagtttggg
ataccagtggtaatcaagtatatcagtgaacctcatatgcactctatgccatccatttca
gttcatccgaatggaaattggcttgcggcacagagtttggataaccagattctgatctac
agtaccagagaaaggtttcagctaaataagaagaagaggttcgcaggccacattgttgcc
ggttatgcatgccaagtgaatttctcgccagatggacggtttgtaatgtcaggagatggt
gagggtaagtgctggttttgggactggaagagttgcaaagtctttaggactcttaaatgt
cacaatggagtatgcatcggagcggaatggcatcctttggaacagagcaaagtggcaaca
tgcggttgggacggcttgattaagtactgggactaa

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