Eutrema salsugineum (saltwater cress): EUTSA_v10008200mg
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Entry
EUTSA_v10008200mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10008200mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10008200mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
EUTSA_v10008200mg
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
EUTSA_v10008200mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
S1
RRP40_S1
DUF7693
Motif
Other DBs
NCBI-GeneID:
18994523
NCBI-ProteinID:
XP_006418241
UniProt:
V4KZ20
LinkDB
All DBs
Position
Unknown
AA seq
324 aa
AA seq
DB search
MVMRKLQLPLSQTQKVRFERAIERLQSLSSTANSDASVIVTDSIPVNHEDAFLKGHGTSE
VDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVSQKGWRVELNFTQDGV
LMLSSMTLPDGIQRRRTSVDELNMRNIFVEDDVVCAEVRNLQHDGSLQLQARSQKYGKLE
KGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIWVGEHVEVRDPMVIDDQKDDEMI
SSSTKNTGKEQSHIPPETRQSICRIGNAIRVLSNLGFTVTVEVIVETVNLSNSKNIDIHD
MLGSEFHVVVAENEAERRRAKRKK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgagaaagctacagctaccgttgagccagactcagaaggtcaggtttgagaga
gccattgagcggctacaatcactgtcatcgacggcgaactctgacgcctctgttatcgtc
accgactccatccccgtgaaccacgaagatgccttcctcaagggacacggaacttctgag
gtcgacggtgagttgctcgcgacggtatgtggagtggtggagcgcgtggataagcttgtc
tatgtacgcaccttacgagccaggtacaagcctgaggttggggatattgtggtaggccgt
gtcattgaggtttctcaaaaaggttggagagtggagcttaactttactcaagatggtgta
cttatgctttcttcaatgacgctacccgatggtatccagaggcggagaacgtctgtagat
gaactcaatatgcggaatatctttgtagaagatgatgttgtttgtgctgaagtacgcaac
ttacagcatgatggcagcttacagttacaagcaagaagtcaaaagtatggaaagctcgag
aaggggcagcttctgaaggtcgatccttacttggttaagagaagcaagcatcactttcac
tacatagaaagtcttgggatcgatttgattattggctgcaatggcttcatatgggttggg
gaacacgttgaagttagagatcctatggtgattgatgatcaaaaggacgatgagatgatc
tcatcctccaccaagaacacaggaaaagagcaaagccatatcccgcccgagactcgacaa
agcatatgcagaatcgggaatgcgattcgggtcttgtctaatctaggattcaccgtgact
gtagaagtaatcgttgagaccgttaacctcagcaactcgaagaacatcgacatacatgac
atgcttggatctgagtttcacgttgtggtcgcggagaatgaagctgaaagaagacgtgcg
aaaaggaaaaagtga
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