KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10009105mg
Entry
EUTSA_v10009105mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10009105mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10009105mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EUTSA_v10009105mg
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EUTSA_v10009105mg
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 18993009
NCBI-ProteinID: XP_006416534
UniProt: V4KXW9
LinkDB
Position
Unknown
AA seq 128 aa
MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL
YCDIPLGLYIIRGENVVLIGELDVEKEELPAQMVQVSEAEIKRAQKAEKEEMLLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggctgctcctgatgatatcttcttctccacttctcttgccgcatacttagac
aagaaacttcttgtcttgcttcgtgatggtcggaagctgatgggtctacttcgttccttt
gatcaattcgctaatgctgtcttagaagaagcttatgaaagagtcatcgtgggtgatctc
tactgtgatattcccttgggtctatacataatccgtggagagaatgttgtcttgattggt
gaacttgacgttgaaaaggaagagcttcctgcccaaatggttcaagtttcagaggcagag
atcaaaagggctcagaaagcagagaaggaagaaatgcttttaaagggtacgatgcggaaa
agaatggagttccttgatctcgattag

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