KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10009553mg
Entry
EUTSA_v10009553mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03008  Ribosome biogenesis in eukaryotes
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    EUTSA_v10009553mg
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10009553mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eus03021]
    EUTSA_v10009553mg
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10009553mg
   03009 Ribosome biogenesis [BR:eus03009]
    EUTSA_v10009553mg
   03016 Transfer RNA biogenesis [BR:eus03016]
    EUTSA_v10009553mg
Transcription machinery [BR:eus03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     EUTSA_v10009553mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     EUTSA_v10009553mg
Ribosome biogenesis [BR:eus03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    EUTSA_v10009553mg
Transfer RNA biogenesis [BR:eus03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    EUTSA_v10009553mg
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC CENPH
Other DBs
NCBI-GeneID: 18993434
NCBI-ProteinID: XP_006417024
UniProt: V4KZA8
LinkDB
Position
Unknown
AA seq 902 aa
MGVPSFYRWLIERYPLILQDVIEEEPLEIGGGGGVVTVSVDTSKPNPNGVEYDNLYLDMN
GIIHPCFHPEDRPSPTTFSEVFQCMFDYIDRLFVMVRPRKLLYLAIDGVAPRAKMNQQRS
RRFRAAKDAAEAAAEEERLRQEFASEGKRLPPKVDSQVFDSNVITPGTHFMSTLSIALQY
YIHVRLNSDPGWKKIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNTCHCLYGLDADL
IMLALATHEIHISILREVVFTPGQQDKCFLCGQIGHRAADCEGKVKRKAGEMFDNTETDV
VAKKPYQFVNIWTLREYLEYDMQIPNSRLQKCLDRIIDDFIFICFFVGNDFLPHMPTLEI
REGAIELLMSVYKKEFGSIASYLSNGSKLNLKNVEHFIQAVGLFENNIFQRRAQTYQRQS
ERFSRDRARASRKDDDGQVVQLENLVGESDSLHALPPRKCLRLSSDDSIGVVKVETENSI
KEEELDNSEDLKFKLKKLMREKFDEFSTGKGEEDKVRLGVQGWRERYYEEKFTAKSVEEM
EQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKFLDKLDIKFELGAPF
KPFNQLLAVLPSASAHALPECFRTLMTDPDSPIADFYPSDFEIDMNGKRYSWQGIAKLPF
IEERRLLAAAAQVEHSLTNEEIRRNSVLSDMLFVVAPHPLAELIRSLNSRTIKLSTEERG
TITETVDPGLSEGMNGYLASCGGDSQPPCFRSPIEGMEDILANQVICAIYKLPDDVRGSN
AARLPPGVVLPKKTVQLVDLKGGANLWHEDGDRRRAPAKIIKIKRYNPQGSISGDRLGKA
AHRLVLQTINSQPDQTFINSEAALCPNTIFQNEQVSKKVPLFQGNVMLKIHPQSEFTRKK
KK
NT seq 2706 nt   +upstreamnt  +downstreamnt
atgggagtaccgtcgttctacaggtggttgatcgagaggtatccgttgattttgcaagat
gtcattgaagaagagccgcttgaaatcggcggcggcggcggcgtcgtcacggtttcggtc
gatactagcaaacctaatcctaatggcgtcgagtatgacaatttgtatctcgacatgaac
ggaatcattcatccatgcttccatcccgaagacaggccttctccgacaacgttttccgag
gtgtttcaatgcatgttcgattacatagataggctttttgtgatggttcgaccccggaag
ctgttatacttggctattgacggtgttgctccaagggcgaaaatgaatcaacagagatcc
agacggtttagagctgcaaaggatgcagcagaagcagcagctgaagaagagcggctgcgg
caagagtttgcgagtgaagggaagaggttgcctcctaaagtggactcccaagtttttgac
tctaatgttataactcctggaacacacttcatgtctactctctcaattgcgttgcagtac
tacattcacgttagactaaattctgatcctgggtggaaaaagattaaggttatcctctca
gatgctaatgttcctggtgagggggaacacaagatcatgtcgtacatacgtcttcaaaag
aaccatcctggttacaacccaaacacctgtcattgtctgtatggtttggacgcagatttg
atcatgctggctttggccacccacgaaattcatatatcgatccttcgtgaggttgtattc
actcctggacaacaagacaaatgcttcttgtgtggccagatcgggcaccgagcagcagat
tgtgagggcaaggtaaagaggaaggcaggagaaatgtttgataatactgagacagatgtc
gtggctaagaagccataccagttcgtcaatatctggacacttcgagagtatttggagtac
gacatgcagatacctaactcacgattgcaaaaatgtttggaccggataatcgatgatttc
atcttcatctgtttttttgttgggaatgatttcttgccacatatgcctacgctagagatc
cgagagggtgctatagaattactgatgtctgtctacaagaaggaatttggatcaatagca
agttacttaagcaatggaagcaagctgaacttaaaaaatgtggagcattttatccaggcc
gttgggctctttgaaaataatatatttcagaggagagcacaaacttatcagaggcaatcg
gaaaggtttagtcgtgatagagctcgagcaagcagaaaagatgacgatggccaggttgtg
caactagagaatctagttggagagtctgattcattgcatgccttacctccacgaaaatgt
ttgcgtctgtcttcggatgatagcattggtgtggtgaaagttgaaacagaaaatagcatt
aaagaagaagaactagataatagcgaagatttgaagtttaagcttaagaaactgatgcgg
gagaaatttgatgagttcagcacaggaaaaggcgaagaagataaggttaggctaggtgta
caaggatggagggagagatactatgaggagaaattcacagctaagtctgtagaggaaatg
gaacaaatacgcagagatgttgttttaaagtatacagaaggcctttgttggataatgcac
tattattatcatggtgtttgttcctggaattggttttatccctatcattatgcacctttc
gcatctgatctcaagttccttgataagctagatattaagttcgaactaggtgcccctttt
aaaccatttaatcagcttctggcagttcttccatctgcaagtgcacatgctctcccagag
tgctttaggacattgatgacagatccagattcacctatagctgacttttatccttctgat
tttgagattgacatgaatggaaagcgctattcgtggcagggtatagcaaaactgcctttt
attgaagaacggcgtcttctggcagcagccgcacaagtggagcattcactgacgaacgaa
gaaattcgaagaaacagtgtgttgtctgacatgctctttgtagttgcacctcatcccctt
gctgagctcatccgttctcttaatagccgtaccataaaattgagcactgaagaacgagga
acaattacggaaacagttgaccctggactaagtgaaggtatgaatggttacttagcttca
tgtggtggagatagtcagcctccgtgcttccgttccccaatcgagggtatggaagatatt
ttagccaatcaagtcatttgtgccatatataaacttccagatgatgttagaggcagcaac
gccgctcgtctacctccaggagtggtgctccctaaaaagactgtacagctagtggatttg
aaaggtggagctaatctatggcatgaagatggtgacagaagacgagctcctgcaaagata
ataaaaatcaagaggtataacccacaaggatccatttctggtgataggcttgggaaggca
gcacacagacttgtgctacaaacaataaattcccaacccgatcagacgttcatcaactca
gaagcagcattgtgtccaaatactatcttccagaacgaacaagtgtcgaaaaaagttcca
ttattccaagggaatgtgatgctgaagatacaccctcagagtgagttcacccggaagaag
aagaaa

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