Eutrema salsugineum (saltwater cress): EUTSA_v10009553mg
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Entry
EUTSA_v10009553mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03008
Ribosome biogenesis in eukaryotes
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EUTSA_v10009553mg
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10009553mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10009553mg
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10009553mg
03009 Ribosome biogenesis [BR:
eus03009
]
EUTSA_v10009553mg
03016 Transfer RNA biogenesis [BR:
eus03016
]
EUTSA_v10009553mg
Transcription machinery [BR:
eus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EUTSA_v10009553mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EUTSA_v10009553mg
Ribosome biogenesis [BR:
eus03009
]
Eukaryotic type
Pre-60S particles
RNases
EUTSA_v10009553mg
Transfer RNA biogenesis [BR:
eus03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EUTSA_v10009553mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
CENPH
Motif
Other DBs
NCBI-GeneID:
18993434
NCBI-ProteinID:
XP_006417024
UniProt:
V4KZA8
LinkDB
All DBs
Position
Unknown
AA seq
902 aa
AA seq
DB search
MGVPSFYRWLIERYPLILQDVIEEEPLEIGGGGGVVTVSVDTSKPNPNGVEYDNLYLDMN
GIIHPCFHPEDRPSPTTFSEVFQCMFDYIDRLFVMVRPRKLLYLAIDGVAPRAKMNQQRS
RRFRAAKDAAEAAAEEERLRQEFASEGKRLPPKVDSQVFDSNVITPGTHFMSTLSIALQY
YIHVRLNSDPGWKKIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNTCHCLYGLDADL
IMLALATHEIHISILREVVFTPGQQDKCFLCGQIGHRAADCEGKVKRKAGEMFDNTETDV
VAKKPYQFVNIWTLREYLEYDMQIPNSRLQKCLDRIIDDFIFICFFVGNDFLPHMPTLEI
REGAIELLMSVYKKEFGSIASYLSNGSKLNLKNVEHFIQAVGLFENNIFQRRAQTYQRQS
ERFSRDRARASRKDDDGQVVQLENLVGESDSLHALPPRKCLRLSSDDSIGVVKVETENSI
KEEELDNSEDLKFKLKKLMREKFDEFSTGKGEEDKVRLGVQGWRERYYEEKFTAKSVEEM
EQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKFLDKLDIKFELGAPF
KPFNQLLAVLPSASAHALPECFRTLMTDPDSPIADFYPSDFEIDMNGKRYSWQGIAKLPF
IEERRLLAAAAQVEHSLTNEEIRRNSVLSDMLFVVAPHPLAELIRSLNSRTIKLSTEERG
TITETVDPGLSEGMNGYLASCGGDSQPPCFRSPIEGMEDILANQVICAIYKLPDDVRGSN
AARLPPGVVLPKKTVQLVDLKGGANLWHEDGDRRRAPAKIIKIKRYNPQGSISGDRLGKA
AHRLVLQTINSQPDQTFINSEAALCPNTIFQNEQVSKKVPLFQGNVMLKIHPQSEFTRKK
KK
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgtcgttctacaggtggttgatcgagaggtatccgttgattttgcaagat
gtcattgaagaagagccgcttgaaatcggcggcggcggcggcgtcgtcacggtttcggtc
gatactagcaaacctaatcctaatggcgtcgagtatgacaatttgtatctcgacatgaac
ggaatcattcatccatgcttccatcccgaagacaggccttctccgacaacgttttccgag
gtgtttcaatgcatgttcgattacatagataggctttttgtgatggttcgaccccggaag
ctgttatacttggctattgacggtgttgctccaagggcgaaaatgaatcaacagagatcc
agacggtttagagctgcaaaggatgcagcagaagcagcagctgaagaagagcggctgcgg
caagagtttgcgagtgaagggaagaggttgcctcctaaagtggactcccaagtttttgac
tctaatgttataactcctggaacacacttcatgtctactctctcaattgcgttgcagtac
tacattcacgttagactaaattctgatcctgggtggaaaaagattaaggttatcctctca
gatgctaatgttcctggtgagggggaacacaagatcatgtcgtacatacgtcttcaaaag
aaccatcctggttacaacccaaacacctgtcattgtctgtatggtttggacgcagatttg
atcatgctggctttggccacccacgaaattcatatatcgatccttcgtgaggttgtattc
actcctggacaacaagacaaatgcttcttgtgtggccagatcgggcaccgagcagcagat
tgtgagggcaaggtaaagaggaaggcaggagaaatgtttgataatactgagacagatgtc
gtggctaagaagccataccagttcgtcaatatctggacacttcgagagtatttggagtac
gacatgcagatacctaactcacgattgcaaaaatgtttggaccggataatcgatgatttc
atcttcatctgtttttttgttgggaatgatttcttgccacatatgcctacgctagagatc
cgagagggtgctatagaattactgatgtctgtctacaagaaggaatttggatcaatagca
agttacttaagcaatggaagcaagctgaacttaaaaaatgtggagcattttatccaggcc
gttgggctctttgaaaataatatatttcagaggagagcacaaacttatcagaggcaatcg
gaaaggtttagtcgtgatagagctcgagcaagcagaaaagatgacgatggccaggttgtg
caactagagaatctagttggagagtctgattcattgcatgccttacctccacgaaaatgt
ttgcgtctgtcttcggatgatagcattggtgtggtgaaagttgaaacagaaaatagcatt
aaagaagaagaactagataatagcgaagatttgaagtttaagcttaagaaactgatgcgg
gagaaatttgatgagttcagcacaggaaaaggcgaagaagataaggttaggctaggtgta
caaggatggagggagagatactatgaggagaaattcacagctaagtctgtagaggaaatg
gaacaaatacgcagagatgttgttttaaagtatacagaaggcctttgttggataatgcac
tattattatcatggtgtttgttcctggaattggttttatccctatcattatgcacctttc
gcatctgatctcaagttccttgataagctagatattaagttcgaactaggtgcccctttt
aaaccatttaatcagcttctggcagttcttccatctgcaagtgcacatgctctcccagag
tgctttaggacattgatgacagatccagattcacctatagctgacttttatccttctgat
tttgagattgacatgaatggaaagcgctattcgtggcagggtatagcaaaactgcctttt
attgaagaacggcgtcttctggcagcagccgcacaagtggagcattcactgacgaacgaa
gaaattcgaagaaacagtgtgttgtctgacatgctctttgtagttgcacctcatcccctt
gctgagctcatccgttctcttaatagccgtaccataaaattgagcactgaagaacgagga
acaattacggaaacagttgaccctggactaagtgaaggtatgaatggttacttagcttca
tgtggtggagatagtcagcctccgtgcttccgttccccaatcgagggtatggaagatatt
ttagccaatcaagtcatttgtgccatatataaacttccagatgatgttagaggcagcaac
gccgctcgtctacctccaggagtggtgctccctaaaaagactgtacagctagtggatttg
aaaggtggagctaatctatggcatgaagatggtgacagaagacgagctcctgcaaagata
ataaaaatcaagaggtataacccacaaggatccatttctggtgataggcttgggaaggca
gcacacagacttgtgctacaaacaataaattcccaacccgatcagacgttcatcaactca
gaagcagcattgtgtccaaatactatcttccagaacgaacaagtgtcgaaaaaagttcca
ttattccaagggaatgtgatgctgaagatacaccctcagagtgagttcacccggaagaag
aagaaa
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