Eutrema salsugineum (saltwater cress): EUTSA_v10010251mg
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Entry
EUTSA_v10010251mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K03093
RNA polymerase sigma-I factor
Organism
eus
Eutrema salsugineum (saltwater cress)
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eus03021
]
EUTSA_v10010251mg
Transcription machinery [BR:
eus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EUTSA_v10010251mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
18021028
NCBI-ProteinID:
XP_006403640
UniProt:
V4LYW1
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MASFNSFPIPKQIAGSSSSSSSSSSRPRILVRSSMASSIGSTNSMLVFVPPHPLIKHWLS
LLRCEQTSFPIFVRIPVNSMGSRIYQKYPLKACGCASATPCTAENVYVELKDPKKSIGVV
EQMSSAEKANLSRSMLQYNLLGKNLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTC
LSRSRGSSVTSCLSDTGTELVVATEEQQTFVPSRRKLKKKARRSSLSTGKGDQGSLLIGS
RTTWNDIDAPRLRKSSKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMS
CWAEAAGMNEILLMRNLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGV
LQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKT
SHGIKYPADEEISKETGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESP
EEAVMRQSAWRDVHDLLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIE
RRAMAKLRDQANAENLRFYLNP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcttccttcaattcgttccccattcccaaacagattgccggttcttcttcttcttcg
tcttcctcttcttctcggccacgtatcttggtgcgatcgagtatggcgtcgtcgattggc
tccaccaatagtatgctggtcttcgtacctccacaccctttgattaaacattggctctcc
cttttgcgatgcgagcaaacttctttccccattttcgttagaattccggtgaattctatg
ggaagcaggatttaccagaaatatcctctaaaagcatgtggctgtgcatctgcaactcct
tgcactgcagaaaatgtgtatgtagagctcaaagatccaaagaaaagtattggcgttgta
gaacaaatgtcatctgcagaaaaagccaatttatctcgtagcatgttgcaatacaatctg
ctagggaagaaccttttggcactagaggaaacttttgtctccttggactcgttaagaatg
gaaagagatattatgttgcaaatggggaagttgggggctactgagttattcaagacctgt
ttatctaggtcccgtggttcttcagtcacttcatgcttatctgacacagggaccgagttg
gtggtagctacagaagaacagcagacctttgtgccttcgagaagaaaattgaaaaagaaa
gcaagaaggtcgagtttgagtactggtaaaggtgatcagggttctttgttgatcggttca
agaaccacatggaacgatattgatgcccctagactgagaaagtcatcaaaatatagaaag
aaaagagagaggatatctagaaacgaggctgagatgtcagcaggagccaagatagtggcg
gacatggagagaatcagaacgaaattagaagaggaaagtggtaaggtagcgagtatgagt
tgttgggctgaagcagcaggaatgaacgagatacttctgatgcgcaacctacattacgga
tggtactgtagagatgagctgttgaaaagcacccggtctttggttctcttcctttcaaga
aattaccgtggactggggatagcccacgaagatttaattcaggcagggaatgtgggagtg
ttacaaggagcagagaggtttgatcacacaaggggttacaagttttcgacgtatgtgcaa
tattggataaggaaatcgatgtccatgatggtgtcacggcatgcaagaggcgtttatatt
ccttcgtctgtaatccgaactatgagtcagatacaaaaggctcgtaagacgttgaaaacg
agccacgggataaagtatccggccgatgaggagatttcgaaagaaacaggctactcgttg
aagaagattcgagcagctaaccaatgcctgaaagtggttggttcaatcgacaagaaagtt
ggggattgctttactacaaaattcctggaatttacaccggacacgacgatggagagtccc
gaggaggctgtgatgaggcagagcgcatggagagacgtacatgatcttctacagggacta
gagccaagagagaagcaagtgatggttctacgttatggacttcaaggcttcaggcccaag
tctcttgaagagattgggaagcttcttaaagttagcaaagaatggattcggaagatcgaa
cggagagcaatggctaaactcagggaccaagccaacgccgaaaatctcagattttatttg
aatccataa
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