KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10011283mg
Entry
EUTSA_v10011283mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10011283mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10011283mg
Enzymes [BR:eus01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     EUTSA_v10011283mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     EUTSA_v10011283mg
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 18011420
NCBI-ProteinID: XP_006392591
UniProt: V4KIZ9
LinkDB
Position
Unknown
AA seq 680 aa
MRRHKRWPLRPLASALARSRFCSSAAAAGAFPLKHVTRSNFEMTLNDLRSHVKAADFVAI
DLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSHPHN
FFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRRQEEEASKRYDE
ESVDSVVETEDLKLVRLADLLFSERMKKRFNEWRSALLHGSSESPGISSGSTESAETVFY
HMRPALSLQGFTSHQLRVIKLVLRKHFGDLVYIHTNDKSSCSKDFVVYTDSESDKENLMK
EAKDERKRVAERKIQSAIGFRQVIDLLSSEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEK
FVASIHDHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSLLCPQIELSSRSSDSILQQ
RVKIDVEVDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACSHLGFDFKHHSESENLAQNEK
LDKYINRLYLSWTRGDIIDLRTSNSNAENWRVSNSKYENIVLIWNFPQKLKAREIKECIC
KALGSTSVTSVYHLDNTAVFVLFKNSELVSNFLKLKQQLESDDGPVRILHPLSKILKGGN
TGAADYDAYKEICSSHISKILFADQAETVGVKSRTRPNPKGETSLETERRENMVAVTDKA
SDLIDAFLANRVDVKVARTN
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgcgccggcacaagcgatggcctttgaggcctctcgccagtgctttggctcgttcgcgg
ttctgctcctcggcggcggcggcgggggctttcccgttgaagcacgtgacgaggtcgaac
ttcgagatgacgctgaatgatctgcgttcgcacgtgaaggctgctgatttcgtggcgatc
gacctcgagatgactggcgtgacgagcgctccgtggcgagactccttggagttcgatcgc
tacgacgtccgatacctcaaagtcaaagactccgctgagaaattcgccgtcgttcagttc
ggcgtctgtccctttcgctgggattctcgcactcagtcattcgtttctcacccgcacaat
ttctttgtatttcctcgtcaagagctcacatttgatccaccagctcatgaatttctctgc
cagacgacatccatggatttccttgcaaagtatcaatttgatttcaacgcctgcatacac
gaaggaatatcttatttgtccagaagacaagaggaagaagcgagtaagcgttacgacgag
gagagtgttgattcagtggttgaaacagaggatttaaagctggtgcgattggcggatctt
cttttctctgaaaggatgaagaaaaggtttaatgaatggcggtctgcccttttacacggt
tcctctgagtctccggggatctcaagtggatcgaccgagagtgctgaaactgtcttctac
cacatgcgtccagctctcagtctgcagggtttcacttctcatcagctcagggttatcaaa
ttggttttaaggaagcattttggagatcttgtgtacatacatacgaatgataaaagttcc
tgttcaaaagactttgttgtgtacactgattcagaatccgacaaggaaaatctcatgaag
gaggcaaaggatgaacgcaagagagtggcggaaagaaaaatacaatctgcaatcgggttc
cgtcaagtaattgatctgctttcttcagagaaaaagttgattgttggtcacaattgtttc
ctggatattgcacatgtatacagtaagtttgtgggtcctcttccttcaacagctgagaaa
ttcgtggcctccattcacgaccactttccttacattgttgacaccaaaatactcttaaac
gtgaacccaatgttgcatcagaggatgaagaagtccagtacgtcactatcctcggcgttc
tccttgttatgtccacaaatcgagttatcttcacgaagctctgactcgattcttcagcag
cgtgtcaagattgacgtcgaagtagacaatgttaggtgttctaactggaatgcaggagga
aaacacgaagccggttatgatgctttcatgacaggttgcatctttgcacaggcatgcagt
catctagggttcgacttcaaacatcattcggaatcagagaaccttgcccagaacgagaaa
cttgacaagtacatcaatcgtctttatctcagctggactagaggcgacatcatcgacctt
cgaacaagcaatagtaatgcagagaactggcgagtctcaaactctaaatacgagaacatt
gttctcatctggaacttcccacaaaaacttaaggctagagagatcaaagaatgcatctgc
aaagccttgggctcgacttccgtcacttctgtctaccacttggacaacactgcggttttt
gtcttgttcaagaactcggaactcgtttcgaacttcctaaagctcaagcagcagctggag
tcagacgatggtcctgtcaggatccttcatcctctctcgaagatcctgaaaggagggaac
actggcgctgcagactatgatgcctataaagagatttgcagctcacacatctcaaagatc
ctattcgctgaccaagctgaaacggttggtgtcaaatcaagaacaagacccaacccaaaa
ggcgagacaagccttgagactgagagaagagagaacatggtcgctgtcactgacaaagca
tcggatttgattgatgcttttttggcaaatagagttgacgtcaaagtcgctaggactaat
taa

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