Eutrema salsugineum (saltwater cress): EUTSA_v10011283mg
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Entry
EUTSA_v10011283mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10011283mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10011283mg
Enzymes [BR:
eus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
EUTSA_v10011283mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
EUTSA_v10011283mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18011420
NCBI-ProteinID:
XP_006392591
UniProt:
V4KIZ9
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MRRHKRWPLRPLASALARSRFCSSAAAAGAFPLKHVTRSNFEMTLNDLRSHVKAADFVAI
DLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSHPHN
FFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRRQEEEASKRYDE
ESVDSVVETEDLKLVRLADLLFSERMKKRFNEWRSALLHGSSESPGISSGSTESAETVFY
HMRPALSLQGFTSHQLRVIKLVLRKHFGDLVYIHTNDKSSCSKDFVVYTDSESDKENLMK
EAKDERKRVAERKIQSAIGFRQVIDLLSSEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEK
FVASIHDHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSLLCPQIELSSRSSDSILQQ
RVKIDVEVDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACSHLGFDFKHHSESENLAQNEK
LDKYINRLYLSWTRGDIIDLRTSNSNAENWRVSNSKYENIVLIWNFPQKLKAREIKECIC
KALGSTSVTSVYHLDNTAVFVLFKNSELVSNFLKLKQQLESDDGPVRILHPLSKILKGGN
TGAADYDAYKEICSSHISKILFADQAETVGVKSRTRPNPKGETSLETERRENMVAVTDKA
SDLIDAFLANRVDVKVARTN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcacaagcgatggcctttgaggcctctcgccagtgctttggctcgttcgcgg
ttctgctcctcggcggcggcggcgggggctttcccgttgaagcacgtgacgaggtcgaac
ttcgagatgacgctgaatgatctgcgttcgcacgtgaaggctgctgatttcgtggcgatc
gacctcgagatgactggcgtgacgagcgctccgtggcgagactccttggagttcgatcgc
tacgacgtccgatacctcaaagtcaaagactccgctgagaaattcgccgtcgttcagttc
ggcgtctgtccctttcgctgggattctcgcactcagtcattcgtttctcacccgcacaat
ttctttgtatttcctcgtcaagagctcacatttgatccaccagctcatgaatttctctgc
cagacgacatccatggatttccttgcaaagtatcaatttgatttcaacgcctgcatacac
gaaggaatatcttatttgtccagaagacaagaggaagaagcgagtaagcgttacgacgag
gagagtgttgattcagtggttgaaacagaggatttaaagctggtgcgattggcggatctt
cttttctctgaaaggatgaagaaaaggtttaatgaatggcggtctgcccttttacacggt
tcctctgagtctccggggatctcaagtggatcgaccgagagtgctgaaactgtcttctac
cacatgcgtccagctctcagtctgcagggtttcacttctcatcagctcagggttatcaaa
ttggttttaaggaagcattttggagatcttgtgtacatacatacgaatgataaaagttcc
tgttcaaaagactttgttgtgtacactgattcagaatccgacaaggaaaatctcatgaag
gaggcaaaggatgaacgcaagagagtggcggaaagaaaaatacaatctgcaatcgggttc
cgtcaagtaattgatctgctttcttcagagaaaaagttgattgttggtcacaattgtttc
ctggatattgcacatgtatacagtaagtttgtgggtcctcttccttcaacagctgagaaa
ttcgtggcctccattcacgaccactttccttacattgttgacaccaaaatactcttaaac
gtgaacccaatgttgcatcagaggatgaagaagtccagtacgtcactatcctcggcgttc
tccttgttatgtccacaaatcgagttatcttcacgaagctctgactcgattcttcagcag
cgtgtcaagattgacgtcgaagtagacaatgttaggtgttctaactggaatgcaggagga
aaacacgaagccggttatgatgctttcatgacaggttgcatctttgcacaggcatgcagt
catctagggttcgacttcaaacatcattcggaatcagagaaccttgcccagaacgagaaa
cttgacaagtacatcaatcgtctttatctcagctggactagaggcgacatcatcgacctt
cgaacaagcaatagtaatgcagagaactggcgagtctcaaactctaaatacgagaacatt
gttctcatctggaacttcccacaaaaacttaaggctagagagatcaaagaatgcatctgc
aaagccttgggctcgacttccgtcacttctgtctaccacttggacaacactgcggttttt
gtcttgttcaagaactcggaactcgtttcgaacttcctaaagctcaagcagcagctggag
tcagacgatggtcctgtcaggatccttcatcctctctcgaagatcctgaaaggagggaac
actggcgctgcagactatgatgcctataaagagatttgcagctcacacatctcaaagatc
ctattcgctgaccaagctgaaacggttggtgtcaaatcaagaacaagacccaacccaaaa
ggcgagacaagccttgagactgagagaagagagaacatggtcgctgtcactgacaaagca
tcggatttgattgatgcttttttggcaaatagagttgacgtcaaagtcgctaggactaat
taa
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