Eutrema salsugineum (saltwater cress): EUTSA_v100122210m
Help
Entry
EUTSA_v100122210m CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v100122210m
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v100122210m
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v100122210m
Spliceosome [BR:
eus03041
]
Complex C
Other components
Step II factors
EUTSA_v100122210m
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
18011208
NCBI-ProteinID:
XP_006392909
UniProt:
V4JXI7
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
DFPCECLYSESSCEDYVEAAVKQAMKIHIASPPGDILIFMTGQDEIEAACFSLKERMEQL
IASSTREITNLLILPIYSQLPADLQAKIFQKSEDGARKCIVATNIAETSLTLDGIYYVID
TGYGKMKVFDPRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRMYTESAYLNEMLPSP
VPEIQRTNLGNVVLLLKSLKVDNLVDFEFMDPPPQENILNSMYQLWLLGALSNVGGLTDL
GWKMVEFPLDPPLAKMLLMGERLDCINEVLTIVSMLSVPSVFFRPKEREEESDAAREKFF
VPESDHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGLRKARQVRSQLLDIPKQLKIPLKSC
GRDWDIVRKAICSAYLHNSGRLKGVGEYVNCRTGMPCHLHPSSALYGLGCTADYVVYHEL
ILTTKEYMQCATSVEPRWLVELGPMLFSIKDSGCEY
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
gactttccctgtgaatgtctctactctgaaagttcttgtgaagactatgttgaagctgct
gtcaaacaggcaatgaagattcacatagcgagcccacctggggacattctcatatttatg
acagggcaagatgagatcgaagcagcttgcttttcactcaaagagagaatggaacagctc
attgcatcctccaccagagaaatcacaaacctactgattctcccaatatactctcagtta
cctgctgacttgcaagcaaaaatattccagaaatcagaagatggagcccgtaaatgtatt
gttgccaccaatatcgctgaaacatcattgacactcgatgggatatattatgtgatcgac
acagggtatggaaagatgaaggttttcgatcctcgaatgggtatggatgctcttcaggtt
ttccccataagccgtgctgcctctgatcagcgtgcaggaagagctggaaggacagggccg
ggaacgtgttacaggatgtatacagagagtgcttatttgaatgagatgttgccaagtccc
gtgccagagattcagcgaacgaatcttggtaacgtcgtgttgttgttgaagtcactgaaa
gtagacaacttggtagattttgaattcatggatccacctccacaagagaacatcctcaac
tctatgtaccagctttggttgttgggtgctcttagcaacgttggaggattaacggatctc
gggtggaagatggtggagttcccattggatccacctcttgctaagatgctcttaatgggt
gaacggcttgattgtataaacgaggttttgacgatcgtgtcaatgctttcagtaccttca
gtgttcttcagacctaaagagagagaagaagagagcgacgcggcgagggagaagtttttc
gtgccggaatctgatcatctaacgctactaaatgtgtatcagcagtggaaagagcatgac
tatagaggagactggtgcaatgaccattacctgcaagtcaaaggtctgaggaaagctaga
caagtaagatcacagcttctggatattcccaagcaactgaagataccactcaagtcgtgt
ggaagggattgggatattgtgagaaaagccatatgttctgcgtatttgcataactcaggt
agattaaaaggtgttggggagtatgtcaactgtagaaccgggatgccttgccatctgcac
ccgagcagcgcactgtacggtctgggatgcacagcggattatgtggtgtaccatgaactg
atcttaaccactaaggaatatatgcagtgtgctacatcagttgagccgcgttggctggtt
gagttagggcccatgttattctcgatcaaggactctggatgcgaatactga
DBGET
integrated database retrieval system
