Eutrema salsugineum (saltwater cress): EUTSA_v10012419mg Help Entry EUTSA_v10012419mg CDS       T02985                                  Name (RefSeq) hypothetical protein   KO K12818   ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6] Organism eus  Eutrema salsugineum (saltwater cress) Pathway eus03040   Spliceosome Brite KEGG Orthology (KO) [BR:eus00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     EUTSA_v10012419mg  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:eus03041]     EUTSA_v10012419mg Enzymes [BR:eus01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      EUTSA_v10012419mg Spliceosome [BR:eus03041]  Complex C   Other components    Step II factors     EUTSA_v10012419mg BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  IBR Helicase_C OB_NTP_bind DEAD AAA_22 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4 AAA_19 zf-RING_2 zf-RING_5 KH_1 Dna2 ABC_tran HA2_N Helicase_RecD AAA_30 AAA_29 zf-RING_11 Motif Other DBs NCBI-GeneID:  18016844 NCBI-ProteinID:  XP_006399531 UniProt:  V4LBF6 LinkDB All DBs Position Unknown AA seq 1779 aa AA seqDB search MRSSFPPADGGRSATNRHSPFSSASTNRCNFRSMQSSPPLNHRPTQRHHHCQYPNSYFPP NYRRDRAPATGISTPCTRIKPNFIVELLHPRTTAANGDAKPSFSVREEEIRSLASLCEIP EESVHVPQFGCIAGSFSFRQWVDALSSVVALWDYRLQGKHDFVPKLIPNVIVPSDMDELN DRLRDLFSAHVLSLMENGESVKKVRTEIDERSRQVESFSSKTFLKIEDFEKKKVLEKQKD LAVERFEEFKNAMKSIVRYLKGNSRSESDGEDVAVFSLEGDYDWPRIHNLIRRECRRLED GLPIYAYRRNILKKIHGEQIMVLIGETGSGKSTQLIQFLADSGVAASESIVCTQPRKIAA LTLAERVRIESSGCYEENFVRCTPAFSSTEEISSKVVYMTDNCLLQHYIKDPSLSGISCV IIDEAHERTLNTDLLLALLKDLLCRRIDLRLVILSATADHDQLSDYFFGCGVLHVSGRNF PVEIVYSPSYTGETCVVGRIAPYVDEVVKMAVEVHKTEKEGTILAFLTSQAEVEWACERF IAPFAVALPLHGKLSFEEQFRVFQNHPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKES KYEPRTGMSILKVCRVSQSSARQRAGRAGRTEAGRCYRLYSQQDFDSMNRNQEPEIRRVH LGVALLRILALGVDNIADFDFVDAPVPEAIAMAVQNLVQLGAVVEKNGVLELTQEGHCLV KLGLEPRLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNLDDKMKADCLKVQFCNH NGDLFTLLSVYKEWASLPRERRNKWCWDNSLNAKSMRRCEDTVKELEKCIERELTLVSPS YWVWNPTESTKYDKHLKMVILASLAENVAMYTGYEQLGYEVALTGQQVQLHPSCSLLAFG QKPNWVVFGELLSIADEYLVCVTACDFEALYMLDPPPPFDASQMDDRRLRVEKVVGCSST VLKRFCGKSNCRLLSIVSRARSLCMDERIGIQVDIDQNEILLYAPPLDMDKVLALVNDAL ECEKKWMHNECLEKSLFHGRGQVPIALFGSGAQIKHLEVDQRFLTVDVLYYGDNVVDDRE LVTFLEKNTDGCICSIHKFAANKQDSHEKEKWGRITFLSPESAMKAAEIQRFDFNGSVLK LFPSLSTGGGGIFRMPSFPSVTAKVRWPRKESIGKGCVKCPSGDVHSIFNGISGLVIGTN YVHVQRDQKSDDSVLISGLDRNLSEEEVLDVLECATSRRDLTFFLFRKFSVQSSSPTACE ELLHKRIFGSMSSRNLDPNCVQVQVFEPKETDSFMRATITFDGRLHLEAAKALQELNGEV LPGCLPWQKIKCEQLFQSSIICSASVYNIVKRQLYDLLSSFERRRGGKWHLEPTLSGAYR VKIWSYATRTIAEMRRDLEELLRGRHINHPDLIPRVLQHLSTRDGFILMRKIQQETETYI IFDRHNHTVRICGSREKIAEAEQELVQSLLAYHESKQLEIHLRGPDIRPDLMKEVVKRFG PELQGIKEKVHDVDLKLNTRNHVIQVHGSKAMRLEVEKMVYELAREKSAPSEEQDDIEVD CPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPIVCSHIDCEAPLVLADMRT LLSQEKLDELFRASLSSFVTASDGKFRFCSTPDCPSIYRVAGPQESGEPFICGACNSETC TRCHLEYHPYLSCERYKQFKENPDLSLKDWARGKDVKMCPACKSTIEKSEGCNHVQCRCG KHICWVCLDFFTQSEPCYEHLRTIHGGIGIADDLGNPLF NT seq 5340 nt NT seq  +upstreamnt  +downstreamnt atgaggagctcttttcctcccgccgacggtggaagatcggcgactaatcgtcactcgccg ttttcttccgcttccaccaaccgttgtaactttcgctccatgcagtcttctccgccactc aatcaccgacctactcagaggcaccaccactgtcagtaccctaattcctatttcccgcca aattacagacgcgatcgggctccggcgacgggaatctctactccatgtacccgtattaag ccgaatttcatcgttgagcttcttcacccgagaactaccgccgctaacggcgacgccaag ccgtctttttcggttagggaggaagagatcagaagcctcgcttcgctctgcgaaatcccg gaggaatccgtccatgttccccaattcggctgtatcgccggaagtttcagttttcgtcag tgggtcgacgcgctttcttccgtcgtggctctctgggattatcgccttcaagggaaacat gatttcgtgcccaagctgattcccaatgtgatcgtcccgtccgacatggacgagcttaat gacaggcttcgcgatcttttctcggctcacgttctgtcgcttatggaaaacggagaaagc gtcaagaaggttagaaccgagattgatgagagatctcgtcaagttgaatccttttcgtcc aaaacttttctcaaaattgaggattttgagaaaaagaaggttcttgagaagcagaaagat ttggctgttgagcggtttgaagaatttaagaatgccatgaagagcattgtgcgatatctc aaaggaaacagcaggtctgagtctgatggagaagacgtggccgtgtttagtttggaaggg gactatgattggccacgtattcataatttgatccgcagggagtgtcgaaggttagaggat gggctacctatctatgcctacaggcgaaatatcttgaaaaagattcatggcgagcagata atggtgttgatcggagaaactggttcagggaagagcactcagttaattcagttccttgct gattccggagttgctgctagtgagtcgattgtttgtacacaaccacggaaaattgctgcc ttgacattggctgaacgggtcagaatcgaaagcagtggttgttatgaggaaaattttgtc cgctgcactccagctttctcttctactgaagagattagttccaaagttgtgtacatgaca gataattgtttgcttcaacactacataaaggatccgagtttgtctggcatttcatgcgtt attattgacgaagcccatgaaagaaccttaaacacagaccttcttttggcattgctcaaa gatttgctatgcagaaggattgacctaaggcttgtcattttgtctgccacggctgatcac gaccaactctcagactatttcttcggctgtggggttcttcatgtaagtgggaggaacttt ccggtggagattgtgtattctcctagttacacaggagagacttgtgttgttggcaggatt gctccatatgttgatgaggttgttaagatggcagtggaagtacataaaacagagaaagaa ggaaccatccttgctttcttgacttcccaagcagaggttgaatgggcatgcgagaggttt atagctccatttgcagttgctttgcctttgcatggaaagctttccttcgaagaacaattt agggtcttccagaaccatcctgggagacgaaaagtgatatttgccacaaatatcgcagag acatcgctgactattcctggtgtcaagtatgtaattgattccggaatggtgaaagagagt aaatatgaacctagaacaggtatgagcatcctcaaggtttgccgggtcagtcagagttct gctcgacaacgtgctggtcgtgctggcaggacagaagccggaagatgttacagactgtac tcacaacaagattttgattcaatgaatcgtaatcaggaacctgaaattcggagggtccat cttggtgtagcacttttgaggattcttgctctgggtgtagacaacatagctgattttgac tttgttgacgcgcctgtccctgaagccattgcaatggctgtccagaatcttgttcagttg ggtgcagtcgttgagaagaacggtgttcttgaattaacacaggaagggcattgcttagtc aagctgggtttggaaccaaggcttggaaagttaattttaggctgcttcagacacagaatg ggtaaagagggaattgttcttgctgctgtcatggctaatgccagcagtatattttgcaga gttggcaacctcgatgataagatgaaagctgattgcctaaaggtacaattctgcaatcat aatggagacctgtttactcttctttcggtttacaaagaatgggcatctctgccgcgagag agaagaaataaatggtgctgggataacagcctgaatgcaaaatcaatgaggagatgtgaa gacacagtgaaggaattggagaaatgcattgagagagaactcactcttgtcagtcctagt tactgggtttggaatccaactgagagcactaaatacgataagcatttgaaaatggttata cttgcatctcttgcagagaatgtggcgatgtacactggctatgagcagcttggatacgag gtggcacttactggtcaacaagttcagttacatccgtcgtgttctttgctagcatttggc cagaagccaaactgggttgttttcggtgaacttctatcaattgctgatgagtacttggta tgtgtaactgcgtgtgattttgaggctttgtatatgcttgatccacctccaccttttgat gcatctcagatggatgaccggaggctccgagtggaaaaagtggttggttgtagtagcact gtgctaaaacgattctgtgggaaatctaactgtagactgctttcaattgtttctcgtgct aggtctctctgtatggacgaaaggattggtattcaagtcgatattgatcagaatgagatt ctactgtatgcgcctcccctcgacatggacaaagtgttagcccttgtgaacgatgcattg gaatgtgaaaagaaatggatgcataatgaatgtttggagaagtctctatttcatggtcgg ggacaagtacctattgcactgtttggatctggtgctcagataaagcatcttgaagttgac cagaggtttttgacagttgatgtactttattatggcgacaatgttgttgatgacagagaa cttgtgacatttctggaaaagaatactgatgggtgtatttgctctattcataagtttgct gctaacaagcaagacagtcatgagaaggaaaagtggggtaggataacctttctctctccg gaatctgctatgaaggcagcagaaattcagagatttgatttcaatggatcagtgcttaaa ttatttccatcgctgtcaacaggtggtgggggaattttcaggatgccttctttcccttct gttacagctaaggttcgttggccgcgaaaggaaagcattggtaaaggctgtgttaagtgc ccttctggtgatgttcacagtatatttaatgggatctccggccttgtgataggtacaaat tatgtccacgttcagagagatcaaaagtccgatgactctgtcttgataagtgggcttgac agaaatctttcggaagaagaagttctagatgttttagagtgcgctacgtccagaagagat ctgactttttttttattcagaaaattcagtgtgcagagttcatcacctactgcttgcgaa gaactgctgcataagagaatatttggatccatgtcatcgaggaatttagatccgaactgt gtccaagtccaagtttttgaaccaaaagaaacagattctttcatgcgagcgactattaca tttgacgggagattacatttggaagctgcgaaagctttgcaggagttaaatggagaggtg ctacctggatgccttccatggcagaagataaagtgtgagcaattgtttcagagctccata atctgctctgcttctgtctacaacatagtcaaaagacagttatatgatttgttatcaagc tttgaaagacgaagaggaggtaaatggcatttggagccaactctcagcggtgcttatcgt gttaaaatttggtcttatgcaacaagaaccatcgcagagatgcggagagatcttgaagaa ctcttgagaggaaggcacataaatcatccagacttaatccctagagtcttgcagcatctt tcgaccagagatggttttattctgatgcggaagatccaacaagagacagaaacttacatt atatttgacaggcacaatcacacagtacgcatttgtggatcacgagagaaaatcgctgag gctgaacaagaactggttcagtcacttctggcctatcacgagagtaagcaacttgaaatc cacctccgaggtcctgatattcgtcctgacctcatgaaggaagttgtgaagaggtttggt ccggagctccaaggtatcaaagagaaggtacatgatgtggatctcaagctcaacacccgg aaccatgttattcaagttcacgggagcaaagcaatgaggctggaagtagaaaagatggtc tatgaacttgcacgagaaaagagtgcaccgagcgaagaacaagatgacattgaagttgac tgtcccatttgcttgtctgaggttgatgatggctactctcttgaaggatgttcacacctc ttctgcaaagcctgtttgttggaacaatttgaggcatcgatgagaaactttgacgcattt cccatagtttgttctcacattgactgtgaagctccattagtactcgctgatatgagaact ctcttatcacaagagaagctcgatgaactcttccgagcatccttgtcctcttttgtaaca gctagtgatggaaagttccggttttgctccacacctgattgcccgtccatctaccgtgta gctggccctcaagaatccggcgaaccattcatctgtggagcctgcaactcagagacatgc acaaggtgtcaccttgagtatcacccgtatctctcttgtgaaaggtacaaacagttcaag gagaatccggacttgtcgctaaaggactgggcaagagggaaggacgtgaagatgtgtccg gcttgcaagtccacgatagagaaatctgaagggtgtaaccatgtgcagtgccggtgtggg aagcacatttgctgggtctgcttggacttcttcactcagtcagaaccttgctatgagcat ttaaggacaattcatggtggaatcggcattgcggacgaccttggtaaccccctgttttga

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