Eutrema salsugineum (saltwater cress): EUTSA_v100124260m
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Entry
EUTSA_v100124260m CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
eus
Eutrema salsugineum (saltwater cress)
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
eus03036
]
EUTSA_v100124260m
Chromosome and associated proteins [BR:
eus03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
EUTSA_v100124260m
microRNA pathway
RISC loading complex
EUTSA_v100124260m
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_dimer
Helicase_C
Ribonuclease_3
DEAD
ResIII
Ribonucleas_3_3
PAZ
Cas3-like_C_2
IstB_IS21
FTO_CTD
AAA_19
SR-25
Motif
Other DBs
NCBI-GeneID:
18018451
NCBI-ProteinID:
XP_006400601
UniProt:
V4LEE6
LinkDB
All DBs
Position
Unknown
AA seq
1145 aa
AA seq
DB search
MPDAEIGDDFCSLDCDADASETQLSSSSSSLSSSFATSPSSSSFSSSYSAPGVDFGACTD
DHSAKLEKDPRKIARRYQLELCKKAMEENIIVYLGTGCGKTHIAVMVIYELGHLILSPKK
SVCIFLAPTVALVEQQAQVIAKSINFKVAIHCGGNRTVNSHSDWEREVLENEHCFIRMEC
ISLLILDECHHAQEQSNHPYAQILRVFYKTEGLQRPRIFGMTASPVVGKGSFQSENLSKS
INSLENLLNAKVYSVESNTQLDGFVSSPIVKVYYYQSAMSEASQSTSIYENMLKDIKQRC
LASLKQQIDTHQIQSLLNMKRLLKRTHDNLIYSLVNLGLWGAIQAARIQLNSDHNVREEP
VEEDPKAKICDTYLSLAAEALSSDVAKDENASELLGLAALKEPLFSRKLLQLIKILSAFR
IEPHMKCIIFVNRIVTARTLSCILNKLKLLESWKSDFLVGLSSGLKSMSRKSMKTILERF
QSKELNLLVATKVGEEGLDIKTCCLVIRFDLPETVTSFIQSRGRARMPESEYAFLVDRGN
EKEMDLIGNFKVNEDRMNLEITSRTSEETCPSLEDEVYRVHETGAWISGGSSISLLYKYC
SRLPHDEFFQPKPEFQFKPVDESGGTICRIILPANAPISEIVSSLLPSIEAAKKNACLKA
VYKLHNLGVLNDFLLPDSKDEIEDELSDEEFDFDKVEGEGCSRGELYEMLVPDLFKQKWD
PSKSCVNLHSYYIRFLPHPADRTYKKFGLFMKSPLPIEAETMDFNLHLAHQRSVSVKIFP
AGDAEFDDDEIRLAELFQEVALKILFERRELIPEFVSLGLQDSFRTRKSTFYLLLPITLH
DAESVISVDWVTIRSCLSSPIFKAPSGLLEDIVPPVGPLLKLANGCWKADDVVNSVVYAT
HKKQFYFVTDICHGRNGFSPVKESSTESHLESISNSYGVELKHPVQPLLRLKPLCYVRNL
LHNRKRENLEPHELEEYFIEIPPELSQLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIEL
KHMLSASIPEIAEVSGHRILEALTTEKCQERFSLERLEVLGDAFLKFAVSRHLFLHHDRL
DEGELTRRRSNVVNNSNLFRLAIRRNLQVYIRDQAFDPTQFFAFGHPCRVTCDEVVMKEV
HSLDK
NT seq
3436 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgctgaaatcggcgacgatttctgctcactcgactgtgatgcagacgcttcc
gaaactcaactctcttcttcttcctcgtctctttcttcttcctttgctacttctccttcc
tcttcttctttctcttcttcctactcggcgcctggggttgattttggcgcttgtacggat
gatcactcagccaaattggagaaagaccctagaaaaattgccaggaggtatcagctggag
ctgtgcaagaaagcaatggaagagaacattatcgtgtatttgggaacaggttgtgggaag
actcacattgcggtgatggttatatatgagcttgggcacttgattcttagccctaagaaa
agtgtttgtatatttcttgctcccactgtggctttggttgaacagcaagcccaagtcata
gcaaagtctatcaactttaaagttgcgatacattgtggcggcaatcggactgtgaatagc
cattccgactgggagagagaggttttagagaatgagcactgtttcatcaggatggagtgt
atttcccttctaatattggatgagtgtcaccatgctcaagaacaaagcaaccatccttat
gcacaaatcttaagggttttctataaaacagaaggtttacaacgacctcgtatatttgga
atgactgcatctccagttgttggcaaagggtcttttcaatcagagaatttatcgaaaagc
ataaatagccttgaaaatttgctcaatgccaaggtttactcagtggaaagcaatactcag
ctggatggttttgtttcatctcctatagtcaaagtatattattatcagtcagctatgagt
gaagcatctcaatcgaccagtatctatgaaaacatgctgaaggacatcaaacagcggtgc
ttggcatcacttaagcagcagattgatacccatcaaatacagagcctcttaaatatgaaa
aggcttctcaaaagaactcatgataatctcatatatagtctggtgaatcttggcctctgg
ggagcaatacaggctgctagaatccaattgaatagtgaccataatgtacgggaagagcct
gtggaagaggatcctaaggctaagatatgtgacacatatctttctttagctgccgaagcc
ctttcttccgatgttgctaaagatgagaatgcatctgaactcctcggcttagcagcgttg
aaggaaccacttttctctagaaagctattacaactgattaaaatcctttcggcattcagg
atagagccacacatgaagtgtataatatttgtcaatcggattgtgactgcaagaacgttg
tcatgcatactaaataagttgaaacttctagagtcttggaagtctgatttccttgttgga
cttagttctggactgaagagcatgtcaaggaagagtatgaagacaattcttgaacggttc
caatctaaagagctcaatctactggtcgccactaaagttggcgaagaaggccttgatatt
aagacatgctgccttgtgatccgctttgatttaccagagactgttaccagcttcatacaa
tccagaggccgtgctcgaatgcctgagtctgaatatgcgtttctagtggacaggggaaac
gagaaagagatggatctcattggaaattttaaagtaaatgaagatcgaatgaatctggaa
attacgtccagaacgtcagaggaaacttgtcctagtcttgaggatgaggtatacagagtt
catgagacaggagcttggatcagtggtggaagtagcatctcccttctgtataaatattgt
tctaggcttccacatgatgaattttttcagcctaagccggagtttcaattcaaacctgtt
gacgaatctggtggaactatctgtcgtataattttacctgctaatgctcctattagtgaa
atcgtcagttcactactaccttcgattgaagctgctaaaaagaatgcttgtctaaaggcg
gtgtataagttgcacaacttgggtgtacttaacgattttctgttgccagattcaaaggat
gaaattgaggacgaattgtcagatgaggaatttgattttgataaagttgaaggtgaaggc
tgttcacgaggtgaactgtatgagatgcttgttcctgacttgtttaaacaaaagtgggat
ccatcaaagagttgtgtcaatcttcactcttactacataaggtttctgcctcatcccgcg
gataggacctacaaaaagtttggtctcttcatgaagtcacctcttcccattgaggctgag
actatggatttcaatcttcaccttgctcatcaaagatctgtaagtgtgaagatttttcca
gcgggagacgcggaattcgacgacgatgagataaggctagcggagcttttccaggaggtt
gccctgaaaattctttttgaacggcgggagctcattcctgaatttgtttccttagggctg
caagactcttttagaacaagaaaatctacgttttaccttctccttccaattactctgcat
gatgcagaaagtgttatatctgtagattgggtgactatcagaagctgcttgtcatcacca
atctttaaggctccatctggtttactggaagatatagttcctcctgtgggacctctttta
aagcttgcaaatggctgctggaaagctgatgatgtggtgaacagcgtggtttatgcgacc
cacaaaaaacaattctactttgtcactgatatttgtcatggaagaaatggtttcagtcct
gttaaagaatcaagcaccgaaagccatttggagagcatatctaattcgtatggcgtggaa
ctcaagcatcctgtacagccactcttgcgtttgaaaccactttgttatgttcggaacttg
cttcacaaccgcaagcgggagaatttggaaccgcatgaacttgaggaatatttcatagag
attcctcctgagctttctcagttaaaaataaaaggattatctaaagatattggaagttcg
ttatccttgctaccatcaatcatgcaccggatggagaatttactcgtggctatcgaactg
aaacacatgctgtctgcttctatccctgagatagctgaagtttctggtcacagaatactt
gaggcgctcacaacagagaaatgtcaggagcgcttttctcttgaaaggcttgaggtgctt
ggtgatgcattcctcaagtttgctgttagccgacacctttttctacaccatgataggctt
gatgaaggagagttgactcggagacgctcaaatgttgttaacaattccaacctatttagg
cttgcaatcaggagaaatttgcaggtttatatccgtgatcaagcattcgaccctacacaa
ttctttgcatttggccatccatgcagagtaacttgtgacgaggtagtgatgaaagaggtt
cattccttggataagg
DBGET
integrated database retrieval system
