Eutrema salsugineum (saltwater cress): EUTSA_v10012468mg
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Entry
EUTSA_v10012468mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10012468mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10012468mg
Enzymes [BR:
eus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUTSA_v10012468mg
Spliceosome [BR:
eus03041
]
Complex C
Other components
Step II factors
EUTSA_v10012468mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
AAA_30
Flavi_DEAD
T2SSE
nSTAND3
ResIII
AAA_16
Sigma54_activ_2
SRP54
ABC_tran
cobW
Motif
Other DBs
NCBI-GeneID:
18019402
NCBI-ProteinID:
XP_006399786
UniProt:
V4LC22
LinkDB
All DBs
Position
Unknown
AA seq
1255 aa
AA seq
DB search
MGVDPFKTTDTLEAEKETGGDLPLKDKLTFTAPERKSRLGFDVRAIEKRENGKSEAEFKV
PKKPTISVTASLDEEDKSDVSGSDFGAGNTLHDHSSRRYREKSSRSETAEESTVTTENAA
ASDVSMTPRSSSSTARYERDDSIRYRKEHRYDKSETPRSRQRNTYDEMDRYRGRESYRQA
NRDYHGEKRGRCSSDRRTPGRSDWDDGKWEWEDSPHGDRDSSYSKRHQPSPSPMLAAASP
DARLASPWLDTPRLTMSSASPWDIGAPSPVPIRASGSSIRSASSRYGGRSNQLAHSREGD
LTEEGHPDEDRSQGAEEYNPEITEKMRLEMEYHSDLAWYDTDEGNSLFDADSASFFLGDD
ASLQKKEAELAKRLVRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEF
DSEEERKAILLVHDTKPPFLDGRVVFTKQAEPVMPVKDPTSDMAIISRKGSGLVREIREK
QSMHKSRQRFWELAGSNLGNILGVEKSAEQIDADTAVVGDEGEVDFKGEAKFAQHMKKGE
AVSDFAMSKTLAEQRQYLPIFSVRDELLQVVRENQVIVVVGETGSGKTTQLTQYLHEDGY
TINGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTVIKYMTDGVLL
RETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSN
FFGSVPIFNIPGRTFPVNILYSKSPCEDYVEAAVKQAMTIHIASPPGDILIFMTGQDEIE
AACFSLKERMEQLIASSSREITNLLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAE
TSLTVDGIYYVIDSGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLY
TESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWV
LGALSNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCINEVLTIVSMLSVPSVFFRPKE
RAEESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGLRKAREVRSQLL
DILKQLKIPLKSCGPDWDIVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYG
LGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEK
TAMEEEMEKLRRDQAESEVRSKEREKQKRAKQQQQVSGPGLRKGTTYLRPKKFGL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcgatccattcaaaaccacggacacgttagaagctgagaaggaaaccggcggt
gatctccctctgaaggataaactaacttttacagctcctgagagaaagtcccgtctaggt
ttcgatgttagggcaattgagaagagggagaatggcaagtccgaggcggagtttaaggtc
cccaagaagccaacaatatctgttacagcatctttggatgaagaggataaatctgatgta
tcaggatcagattttggagcaggaaatactctacatgaccattccagcagacgctataga
gagaaatcttcaagatctgagactgcggaagaaagtaccgtgactacagagaatgctgcg
gcttcagatgtttccatgactcccaggagttcatccagcactgctagatatgagagagat
gatagcatcagatatcgaaaagaacataggtatgataaaagtgaaaccccgcggtcaagg
cagagaaacacctatgatgagatggatcgctaccgagggagggagtcctatcgccaagct
aaccgagattatcacggagaaaagcgtggaagatgcagtagcgataggagaactccaggt
aggtcagactgggatgatggaaaatgggaatgggaagatagtccacacggagatcgagac
tctagttacagcaagcgacatcagccttccccgtcacccatgttagctgcagcttcacca
gatgctcgtttagcctccccgtggctggatacaccacgtttaacaatgtcttctgcttct
ccatgggatattggtgcaccttcccctgttccaatccgggcttctgggtcctctatcaga
tccgcaagctctaggtatggtggaagatccaatcaacttgcacactctagggaaggtgat
ctgactgaggaggggcatccagatgaggatagatcgcaaggagctgaagaatataaccct
gagatcacagaaaaaatgcgtttggagatggaatatcactcggaccttgcatggtatgat
acggacgaagggaactcactgtttgatgcagatagtgcatccttttttcttggagatgat
gcgtctctacaaaagaaggaagccgagctggcaaaaagactggttagaagggacggtagc
aaaatgtcacttgctcagagtaaaaaatactctcagcttaatgcagataatgctcagtgg
gaagaccgtcagcttctcagatctggagctgttagaggcacagaagtgcagactgagttt
gatagtgaagaagaacggaaagcaattcttcttgtacacgatacgaagcctccttttctt
gatggaagagtcgttttcacaaagcaagcggagccagtaatgcctgtaaaggatcccaca
tcagatatggctataatttcacgaaaaggatcgggccttgtcagagaaattcgggagaaa
caaagtatgcataaatcacgacagcgattttgggagcttgcaggatctaaccttggtaat
atccttggtgttgaaaaatcagctgagcagattgatgccgatactgctgtagttggtgac
gaaggtgaagtagactttaaaggagaggctaaatttgcacaacatatgaagaagggggaa
gctgtgagtgattttgccatgtcaaaaaccttggcagagcaacgacagtatctccccata
ttttctgttagagatgaattattgcaggtagtaagagaaaaccaggtaattgtggtggtt
ggcgaaactggttcggggaagaccactcaactaacacagtatcttcacgaggatgggtac
actataaacggtatagtaggttgcacccaaccaaggcgtgtagcagccatgagtgttgca
aagagagttagtgaagagatggaaacagagttgggcgataaagtagggtatgcgattcgt
tttgaagatgtaactggtccaaacactgtcataaagtacatgaccgatggagtgctactg
agagagacactcaaagattccgacctggataagtatcgtgtggtggtgatggatgaagcg
catgaaaggtcactcaacacagacgtactttttggaatactaaaaaaagttgtggctcgg
cgtcgtgatttcaaactgatagtcacgtcagcaacccttaatgctcaaaagttttccaat
ttctttgggagtgttcctatattcaacattcctggaaggactttccctgtcaatattctc
tactctaaaagtccttgtgaagactatgttgaagctgctgttaaacaggcaatgacgatc
cacatagcgagcccacctggggacattctcatatttatgaccgggcaagatgaaattgaa
gcagcatgcttttcacttaaggagagaatggaacagcttattgcatcctccagcagagaa
atcacgaacctactgattctcccaatatactctcagttacccgctgatttgcaagcaaaa
atattccagaaaccagaagatggagctcgtaaatgcattgttgccaccaatattgctgaa
acatcactgacagtcgatggaatatattatgtgattgactcggggtatggaaagatgaag
gttttcaatcccagaatgggtatggatgctcttcaggttttccccataagtcgtgctgcc
tctgatcagcgtgcaggaagagcagggaggacagggccgggaacatgttacaggctgtat
acagagagtgcttatttgaatgagatgttgccaagtcccgtgccagagattcaacgaacg
aatctgggtaacgttgtcttgttgttgaagtcactgaaaatagacaacttgcttgatttt
gattttatggatccacctccacaagagaacatcctcaactctatgtaccagctttgggtg
ttgggtgctcttagcaatgttggaggactaacggatctcgggtggaagatggtggagttc
ccattggatccacctcttgcaaagatgctcttaatgggtgaacggcttgattgcataaac
gaggtcttgacgatcgtgtcaatgctttcagtaccttcagtgttcttcagacctaaagag
agagcagaagagagcgatgccgcaagggagaagtttttcgtgccggaatccgatcatcta
acgctactgaatgtgtatcagcagtggaaagagcacgactatagaggagactggtgcaat
gaccattacctgcaagtcaaaggtctgagaaaagctagagaagtaagatcccagcttcta
gatatcctcaagcaactgaagataccactcaagtcgtgtggaccggattgggatattgtg
agaaaagccatatgttcagcgtatttccataactcagccagattaaaaggtgttggtgag
tatgtgaactgtagaactgggatgccttgccatttgcatccgagcagtgcactgtacggt
ctgggatacacaccggattatgtggtgtaccatgagctgatcttgaccacgaaggagtac
atgcagtgtgctacatcggttgagccacattggctggctgagttagggcccatgttcttc
tcggtgaaggactcggatacatcgatgttggagcataaaaagaagcagaaggaagagaaa
acagcaatggaggaagagatggagaaactgagaagagatcaagcagaatcggaggtcaga
agcaaagagagagagaaacagaaaagggcaaagcagcagcaacaggtgtcaggtcctggc
ttgagaaaaggcaccacgtacctcaggcctaagaagtttggcctgtga
DBGET
integrated database retrieval system
