Eutrema salsugineum (saltwater cress): EUTSA_v10012491mg
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Entry
EUTSA_v10012491mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03440
Homologous recombination
eus03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EUTSA_v10012491mg
03460 Fanconi anemia pathway
EUTSA_v10012491mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eus04121
]
EUTSA_v10012491mg
03036 Chromosome and associated proteins [BR:
eus03036
]
EUTSA_v10012491mg
03400 DNA repair and recombination proteins [BR:
eus03400
]
EUTSA_v10012491mg
Ubiquitin system [BR:
eus04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
EUTSA_v10012491mg
Chromosome and associated proteins [BR:
eus03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
EUTSA_v10012491mg
DNA repair and recombination proteins [BR:
eus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
EUTSA_v10012491mg
FA (Fanconi anemia) pathway
Downstream FA components
EUTSA_v10012491mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
18016678
NCBI-ProteinID:
XP_006398599
UniProt:
V4LCG1
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MSTWQLISDSSGDCFRWEVAGRILQSDSDSSPTKTLLESTPPLPSMADLLRQGCSKLVER
EEPMPGEILMFRTGLGRSVALKESSIARAKSILADDNVVYSDLQDTGCSNLQKRQVDTAG
NLPMFTTALGKSVPLKDSSIAKAMSILGGDLIDSGNVLPRESGFGDPTSLFQTASNKKVI
LSSPGLARAKALLGRGEDDLNGFNHVNRSFSSHQQHGWSELKTHEEFDATAVQRHSGTPG
QYEGHVFGKMSEVLNPSSKVPPTKFQTAGGKSLSVSVEALKRARNLLGDPELGNFFDDVA
VGDQFVTPQKDKRLGDIPINNGSANTGSITHEGKTSHKHTSNSFISPLRSSSKKFRSVKS
KDLASGANSIKKFDAALDKTDCSLNSTKLATHGISNGRPSASDIAVTSSKEISFIPRGKQ
FGRPSDQPLVDITNRSDTAYANNKQGSTQKKRLGNTVSVSPFKRPRNSSFKTPLKKNAQH
ASSGLSVVSCDTLYSKKVLSTRYPEKSPRVYIKDYFGMHPTATPKMDYVPDHVRRIKSSN
ADKYVFGDGSSSNVVGAETFLQMLAECGASLQQVSRKWVTNHYRWIVWKLACYETYYPAK
CRGNFLTITNVLEELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLAVSAINPKTDNDS
QETHGSDSGSNMKVELTDGWYSMKAALDVMLTKQLNAGKLFVGQKLRILGAGLSGWANPT
SPLEAVVSNTICLLLNINGTYRAHWADRLGFCKEVGVPLAFNCIKCNGGPVPKTLAGITR
IYPILYKERVGERKSIIRSERMESRMIQRHNQRRSALIEGLMCEYQREINGFHSQNDTDS
EEGAKVFKLLETAPEPELLMAEMSLEQLTSFATYKAKYEAAKQLQMEKSVAKALEDAGLG
ERDVTPFLRVRLVGLTSLTYEGEHNIKEGIVTIWNPTERQRTELREGKIYMMKGLVPMNS
DSEILYLHARGSSSRWQPLSPKASESFQPFFNPRKLIYLSNFGEIPLSSEFDIAAYVVYV
GDAYADFQQKKQWVFVTDGSTQHSNSHSGETTSNSLLAISFSTPSMDDFPTPYISHNLVG
SVVGFCNLLKRAKDAKNDMWVGEATENSIYFINVEAAYSSHLKTSSAHIQTWAKRPSSNS
VIRELRQRVLFIIGACQSPSSSR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttaatatccgattccagcggcgattgtttccggtgggaagtcgct
ggccggattcttcagtctgactccgactcctctccaacaaagacgctgctcgaatccacg
cctcctctaccttccatggccgatctcttgcgccaaggatgctcgaagcttgtagaacgg
gaggagccgatgcctggggaaatcctaatgttcaggactgggctggggaggtctgtagct
ctaaaagagtcttcgattgctagagccaaatccattttagcagatgacaatgttgtttat
tcagatttgcaggacacaggatgctcaaatctccaaaagagacaagtggatacagctgga
aatttgcctatgttcacgacggccttagggaaatctgtcccactgaaagactcttcgatt
gccaaagctatgtctattcttgggggtgatttgattgactcaggcaacgttcttcccagg
gaaagtgggtttggtgatcccaccagtctttttcagacagcttctaacaagaaggttatt
ctatcttctcccggtcttgcaagagccaaggcattgttaggacgaggagaagatgatttg
aatggatttaaccacgtgaaccggtcgttttcttcccaccagcaacatggctggtctgag
ttaaaaactcatgaggagtttgatgctacagcggttcagcgtcattcaggaactccagga
caatatgagggtcatgtatttgggaagatgtcagaagttttaaatccatcttcaaaggtg
cctccaacaaagtttcagactgctggaggaaaatcattgtcagtgtcagttgaggctttg
aaacgtgcaagaaaccttcttggagaccctgagttagggaatttctttgatgatgtagca
gtaggtgatcagtttgttactccacagaaagataaaaggttaggtgatattcctataaac
aatggaagtgccaacacaggctctattactcatgaaggaaagacaagccacaagcatacg
tcaaatagttttatatctcctcttcggtcatcttcaaagaaatttagatcagtcaaatcg
aaggacctagcttcaggggctaattcgatcaagaaatttgatgcagctcttgataagaca
gactgttctctgaatagtactaaacttgctacacatggaatatcaaatggcagaccttca
gcatcagatatagctgtgactagttcgaaggaaattagtttcattccaagaggtaaacaa
tttggaaggccatctgaccagccacttgtcgatataacaaatcgcagtgatacagcttat
gcaaacaataaacaaggcagtacccaaaagaaaagactgggaaacacagtctctgtttct
ccttttaaaaggccaaggaattcctcgtttaaaactcctttaaagaaaaatgctcagcat
gcttctagtgggttgtctgtcgtatcttgtgatacactttattcaaaaaaggtgctttct
acaagatatccagaaaagtcgccaagagtatatatcaaggattattttggaatgcatcca
acagccacgcccaagatggattatgtgccagaccatgtcagaagaatcaaatcaagtaat
gcagataaatatgtattcggtgatgggtcctcctcaaatgtagttggagctgaaactttt
cttcaaatgttggctgagtgtggtgcttccttacagcaagtatctagaaagtgggtcact
aatcactacaggtggatagtctggaaacttgcatgctacgagacatactacccagctaaa
tgcagagggaattttctgacaatcaccaatgttctcgaggaactaaaatacaggtatgag
agagaggttaatcatggtcattgctctgcaatcaagaggattctgagtggtgatgctcca
gcttcttcaatgatggtgctcgccgtatcagctattaatccaaagaccgataatgattcc
caggaaacacatggttctgatagtggcagcaatatgaaagtagaactcactgatgggtgg
tactcgatgaaggctgctctggatgtcatgctgacaaagcagctgaatgctggaaaattg
tttgttgggcagaagcttcgaatccttggggcaggactttctggctgggctaacccaaca
tcacctcttgaggcagtggtttcaaatacgatctgtttgttgttgaatattaatgggaca
tacagagctcactgggcggaccgactaggattctgtaaagaagttggtgtccctctggcc
ttcaactgtatcaagtgcaatgggggtccagtgcccaaaacattagctggaatcacacga
atataccctatcctatacaaggaaagggtaggtgaaaggaagtcaataattcgatcagag
agaatggaaagtagaatgatccagcgacataaccagaggcgctcagctcttattgagggt
cttatgtgtgagtaccagagagaaatcaatggtttccacagccagaatgatactgatagt
gaagaaggagccaaggtctttaagctgttagagacggctcctgaacctgaactcctaatg
gcagaaatgagcctggagcagttgacatctttcgctacatataaagcaaaatatgaggca
gccaagcaattacagatggaaaaatcagtggcaaaagctctggaagatgctggcttaggt
gaaagggatgtaaccccattcttgagagttaggcttgttggattgacgagcttaacttat
gaaggcgaacacaatataaaagaaggcatcgtaacaatctggaatcccactgagagacag
agaaccgagttgagagagggaaaaatatacatgatgaaagggctagtaccaatgaactca
gattcagagatactttacttacatgccagaggttctagctcaaggtggcagcctttgtct
ccaaaagcttccgagagttttcagccctttttcaaccctcgtaaactgatttatttgtca
aattttggtgaaattcctctttcaagtgaatttgatatcgctgcgtacgttgtatatgtt
ggagatgcatacgcggattttcagcaaaagaagcagtgggtttttgtgacagatggatcc
actcaacattcaaattcacattcaggggaaacaacatcaaatagtcttctggctataagc
ttcagcaccccatccatggatgacttccccactccctacatcagccataaccttgtcgga
tccgtggtaggattctgcaacctattaaaaagagcgaaggatgcgaaaaatgatatgtgg
gttggggaggcaacagaaaactcaatctacttcataaacgtagaagctgcttactcctct
cacctcaaaaccagcagtgcccatatccaaacatgggctaagcgcccttcttccaactcc
gtcatccgtgaacttcggcagagagttttatttataatcggtgcttgtcaatcaccatca
agctcaaggtga
DBGET
integrated database retrieval system
