Eutrema salsugineum (saltwater cress): EUTSA_v10012572mg
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Entry
EUTSA_v10012572mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10012572mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10012572mg
03016 Transfer RNA biogenesis [BR:
eus03016
]
EUTSA_v10012572mg
Enzymes [BR:
eus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EUTSA_v10012572mg
Messenger RNA biogenesis [BR:
eus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EUTSA_v10012572mg
Transfer RNA biogenesis [BR:
eus03016
]
Prokaryotic type
tRNA degradation factors
EUTSA_v10012572mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_PNO1_2nd
KH-I_KHDC4-BBP
Urease_gamma
CDC73_N
Motif
Other DBs
NCBI-GeneID:
18017709
NCBI-ProteinID:
XP_006399970
UniProt:
V4LNJ5
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MSSIVSRARSTSLPNFLAWRALGFRTICSGRLGFAPSDPGLPATAGTKILESFKEEFEVG
SRVVTLETGKIARFANGSVVLGMDQTKVLSTVTCAKTNEPRDFLPLTVDYQEKQYAQGLI
PNSYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPDILAANA
SSAALMLSDVPWGGPIGVIRLGRIGGQIVVNPTMDELSSSDLNLIYACTRDKTMMIDVQA
REISEKDLAAALRLAHPEAVKYIDPQIRLAEKAGKQKKEYKLSMLSEKTLEKVTDLAATR
IESVFTDPSYGKFERGEALDNIGKDVKKVFEEEGDQESLSILPKAVDTVRKKVVRSRMIS
DGFRVDGRHLDEVRPIYCESHYLPGLHGSALFSRGDTQVLCTVTLGAPGDAQSLDSVVGP
PKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTVRINSEV
MSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLVTDVDPSSGEIKDYRIVTDILGL
EDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMERDINSP
RDQDGAYSPRLATLKYTNDALRSLIGPMGALKRKIEEETGARLSIDDGTLTIVAKNQAVM
EKAQEKVDFIIGREIVVGGVYKGTVTSIKEYGAFVEFNGGQQGLLHMSELSHEPVSKVSD
VLHIGKYITMMCIDTDVRGNIKLSLKALLPKPERKPVCNPEKNTVVEESSTVSIETSSVG
ETVASMPSVVETPQKSKLAVPAVVIRTAVECDEAEKSSPVDKNTKPKRATTQKPDRKLKS
TASKQTAMQKEKVVLESTAPEETLAICGETLKQDEKFESTSADLVSSSKTKKSSRKEKQA
ENESEESASISPRTLKIGTEMMAKVHQVRTRGLVLDLGGGIRGMYKFEGDEETEFDIGDA
LKVKCTSFTSKGIPVMALVDDEEV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgattgtgagtcgagctaggtcaacttctcttccgaatttcctcgcatggcgt
gctttgggctttcgcaccatctgctccggccgcctgggcttcgcgccgtctgatccaggc
ttgccggccaccgcaggaaccaaaattttggaatcttttaaagaggaattcgaagtcgga
tctcgcgtcgtcactctcgagacggggaaaatcgcccgctttgccaatggttccgttgtg
ctcggcatggaccagaccaaagttctctctaccgttacttgtgctaagaccaacgagcct
cgggatttcttgcctctcaccgttgactatcaagagaagcaatacgcgcaaggcttgatt
ccaaattcgtatatgcgaagagaaggtgcaccaaaagagcgggagctgttatgtggccgg
ctcattgataggccaattagaccgttgtttccttcagggttttaccatgaggttcagata
atggcaagtgtactatcgtcagatggcaagcaagatccagatatactggcagctaacgca
tcatcggctgcgctcatgctatcggatgttccatggggagggcccattggagtcattcga
ttaggaaggataggtggccaaattgttgtcaatccaactatggatgagcttagctcaagt
gatctcaatttgatatacgcttgcacaagggacaagactatgatgattgatgttcaagcc
cgtgaaatctcagagaaagatctagcagcggctctgaggctagctcatccagaggctgtt
aagtacatcgatccccaaataagattggctgaaaaagctgggaaacaaaagaaggagtac
aaattgtccatgctttctgagaaaactttagaaaaagtgactgacttggctgcaacgcgt
attgaatccgtctttactgatccttcatacggcaagtttgaacgtggagaggctctagat
aacattggaaaagatgtgaaaaaagtatttgaagaagagggcgatcaagaaagcttgagc
atccttccaaaggctgttgatacagtgagaaagaaggtagtccgttcaaggatgatatca
gatggatttcgagtcgacgggagacatcttgatgaagttaggcccatctattgcgaatcg
cattacctacctggattgcatgggtcagcacttttctcacgtggagatacacaggtgctt
tgtactgtcacacttggagccccaggagatgcacaaagcctggattctgttgttggcccc
ccgaaaaagagatttatgcttcactacagctttcctccgtattgtacaaatgaagtcgga
aaacgaggaggccttaacaggcgtgaagttggtcatggaacacttgctgagaaggcattg
ctagctgtcttgccccctgaagaggcttttccttatactgttcgtataaattcagaagtg
atgtcctcagatggctccacgtctatggcaagcgtttgtggaggtagtatggctttgatg
gatgccggaattcctcttagagctcatgttgcaggtgtctccgttggtcttgtcactgac
gttgatccatcaagtggagaaattaaagattaccgtatagtaaccgatatattgggtttg
gaagaccatctcggagatatggatttcaagattgccggcacacgaaatggtgtgacagca
attcaattggatatcaagccagctggaataccgttagatattgtttgtgaatcattagaa
aatgcacgtgaagcccgccttcagattcttgaccacatggagagagacattaattcccca
cgagaccaagatggggcttattcccctcgtctagcaactttgaagtacaccaatgatgca
cttcgtagcttgatcggacctatgggtgccctcaagaggaaaattgaagaggaaacaggt
gcaagattgtctattgatgatggaacattaactattgttgccaagaatcaggctgtgatg
gaaaaggctcaagaaaaggttgacttcatcattggtcgtgaaatagttgttggtggtgtg
tataaaggcacggtgacctctataaaagagtacggcgcatttgttgagttcaatggtggc
caacaaggcctattacatatgtctgagttatctcatgaaccggtctccaaggtttcagat
gtattacatattggcaagtacattactatgatgtgcattgacactgatgtccgcggtaac
attaaattatcactcaaagcactgttacccaaacccgaacggaaaccagtatgtaatcct
gaaaaaaacacggtggtggaagagtcgtctacagtgtccatagaaacgtctagtgttgga
gagacagttgcaagcatgcccagtgttgtagagacacctcagaaatctaaattagcagtt
cctgcagttgtcatccgtactgctgtggaatgtgatgaggcagagaaatcttctcctgtg
gacaagaacaccaaacccaaacgtgctacgacacagaaaccagaccggaaactcaaatct
actgcctctaaacagactgcgatgcagaaggaaaaggtggtgctcgaatccactgctcca
gaagaaactctggctatctgtggcgagacactgaagcaagacgagaaattcgaatccact
tctgctgacctagtatcatcttcaaaaactaagaaatcttctaggaaggagaaacaagca
gagaacgaaagtgaagagagtgcatcgattagtccccggacactgaaaataggaacagaa
atgatggccaaagtccaccaggttcgaacccgtggattggttcttgatttaggtggtgga
atccgcgggatgtacaaattcgagggcgatgaagagacagagtttgatattggagacgca
ttgaaggtgaaatgtacaagttttacttcaaaaggaatccctgtgatggctttggttgac
gacgaggaggtttaa
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